Analysis of interatomic Contacts of Structural Units in PDB entry:
9CD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CD9 entry

There are 22 chains in PDB entry 9CD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 14PHE 94
F
 GLY 36LEU 100
G
 GLY 14PHE 94
H
 GLY 36LEU 100
I
 GLY 14PHE 94
J
 GLY 36LEU 100
U
 GLY 14PHE 94
V
 GLY 36LEU 100
W
 GLY 14PHE 94
X
 GLY 36LEU 100
Y
 GLY 14PHE 94
Z
 GLY 36LEU 100
K
 GLY 14PHE 94
L
 GLY 36LEU 100
M
 GLY 14PHE 94
N
 GLY 36LEU 100
O
 GLY 14PHE 94
P
 GLY 36LEU 100
Q
 GLY 14PHE 94
R
 GLY 36LEU 100
S
 GLY 14PHE 94
T
 GLY 36LEU 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9CD9

There are 14 sheets in PDB entry 9CD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
16 20first strand
Strand 2
E
16 20parallel
Strand 3
G
16 20parallel
Strand 4
S
16 20parallel
Strand 5
Q
16 20parallel
Strand 6
O
16 20parallel
Strand 7
M
16 20parallel
Strand 8
K
16 20parallel
Strand 9
Y
16 20parallel
Strand 10
U
16 20parallel
Strand 11
W
16 20parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
25 30first strand
Strand 2
E
25 30parallel
Strand 3
G
25 30parallel
Strand 4
S
25 30parallel
Strand 5
Q
25 30parallel
Strand 6
O
25 30parallel
Strand 7
M
25 30parallel
Strand 8
K
25 30parallel
Strand 9
Y
25 30parallel
Strand 10
U
25 30parallel
Strand 11
W
25 30parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
38 40first strand
Strand 2
E
38 40parallel
Strand 3
G
38 40parallel
Strand 4
S
38 40parallel
Strand 5
Q
38 40parallel
Strand 6
O
38 40parallel
Strand 7
M
38 40parallel
Strand 8
K
38 40parallel
Strand 9
Y
38 40parallel
Strand 10
U
38 40parallel
Strand 11
W
38 40parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 50first strand
Strand 2
E
43 50parallel
Strand 3
G
43 50parallel
Strand 4
S
43 50parallel
Strand 5
Q
43 50parallel
Strand 6
O
43 50parallel
Strand 7
M
43 50parallel
Strand 8
K
43 50parallel
Strand 9
Y
43 50parallel
Strand 10
U
43 50parallel
Strand 11
W
43 50parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
55 66first strand
Strand 2
E
54 66parallel
Strand 3
G
54 66parallel
Strand 4
S
54 66parallel
Strand 5
Q
54 66parallel
Strand 6
O
54 66parallel
Strand 7
M
54 66parallel
Strand 8
K
54 66parallel
Strand 9
Y
54 66parallel
Strand 10
U
54 66parallel
Strand 11
W
54 66parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
69 71first strand
Strand 2
E
69 71parallel
Strand 3
G
69 71parallel
Strand 4
S
69 71parallel
Strand 5
Q
69 71parallel
Strand 6
O
69 71parallel
Strand 7
M
69 71parallel
Strand 8
K
69 71parallel
Strand 9
Y
69 71parallel
Strand 10
U
69 71parallel
Strand 11
W
69 71parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
75 80first strand
Strand 2
E
75 80parallel
Strand 3
G
75 80parallel
Strand 4
S
75 80parallel
Strand 5
Q
75 80parallel
Strand 6
O
75 80parallel
Strand 7
M
75 80parallel
Strand 8
K
75 80parallel
Strand 9
Y
75 80parallel
Strand 10
U
75 80parallel
Strand 11
W
75 80parallel
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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
89 93first strand
Strand 2
E
89 93parallel
Strand 3
G
89 93parallel
Strand 4
S
89 93parallel
Strand 5
Q
89 93parallel
Strand 6
O
89 93parallel
Strand 7
M
89 93parallel
Strand 8
K
89 93parallel
Strand 9
Y
89 93parallel
Strand 10
U
89 93parallel
Strand 11
W
89 93parallel
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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
38 40first strand
Strand 2
F
38 40parallel
Strand 3
H
38 40parallel
Strand 4
T
38 40parallel
Strand 5
R
38 40parallel
Strand 6
P
38 40parallel
Strand 7
N
38 40parallel
Strand 8
L
38 40parallel
Strand 9
Z
38 40parallel
Strand 10
V
38 40parallel
Strand 11
X
38 40parallel
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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
45 57first strand
Strand 2
F
45 57parallel
Strand 3
H
45 57parallel
Strand 4
T
45 57parallel
Strand 5
R
45 57parallel
Strand 6
P
45 57parallel
Strand 7
N
45 57parallel
Strand 8
L
45 57parallel
Strand 9
Z
45 57parallel
Strand 10
V
45 57parallel
Strand 11
X
45 57parallel
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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
62 66first strand
Strand 2
F
62 66parallel
Strand 3
H
62 66parallel
Strand 4
T
62 66parallel
Strand 5
R
62 66parallel
Strand 6
P
62 66parallel
Strand 7
N
62 66parallel
Strand 8
L
62 66parallel
Strand 9
Z
62 66parallel
Strand 10
V
62 66parallel
Strand 11
X
62 66parallel
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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
69 71first strand
Strand 2
F
69 71parallel
Strand 3
H
69 71parallel
Strand 4
T
69 71parallel
Strand 5
R
69 71parallel
Strand 6
P
69 71parallel
Strand 7
N
69 71parallel
Strand 8
L
69 71parallel
Strand 9
Z
69 71parallel
Strand 10
V
69 71parallel
Strand 11
X
69 71parallel
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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
75 83first strand
Strand 2
F
75 83parallel
Strand 3
H
75 83parallel
Strand 4
T
75 83parallel
Strand 5
R
75 83parallel
Strand 6
P
75 83parallel
Strand 7
N
75 83parallel
Strand 8
L
75 83parallel
Strand 9
Z
75 83parallel
Strand 10
V
75 83parallel
Strand 11
X
75 83parallel
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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
91 96first strand
Strand 2
F
91 96parallel
Strand 3
H
91 96parallel
Strand 4
T
91 96parallel
Strand 5
R
91 96parallel
Strand 6
P
91 96parallel
Strand 7
N
91 96parallel
Strand 8
L
91 96parallel
Strand 9
Z
91 96parallel
Strand 10
V
91 96parallel
Strand 11
X
91 96parallel
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