Analysis of interatomic Contacts of Structural Units in PDB entry:
9CDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CDA entry

There are 18 chains in PDB entry 9CDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 GLY 14GLY 93
L
 LYS 21LEU 100
M
 GLY 14GLY 93
N
 LYS 21LEU 100
Q
 GLY 14GLY 93
R
 LYS 21LEU 100
S
 GLY 14GLY 93
T
 LYS 21LEU 100
U
 GLY 14GLY 93
V
 LYS 21LEU 100
W
 GLY 14GLY 93
X
 LYS 21LEU 100
Y
 GLY 14GLY 93
Z
 LYS 21LEU 100
a
 GLY 14GLY 93
b
 LYS 21LEU 100
O
 GLY 14GLY 93
P
 LYS 21LEU 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9CDA

There are 12 sheets in PDB entry 9CDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
15 20first strand
Strand 2
K
15 20parallel
Strand 3
S
15 20parallel
Strand 4
Q
15 20parallel
Strand 5
W
15 20parallel
Strand 6
U
15 20parallel
Strand 7
a
15 20parallel
Strand 8
Y
15 20parallel
Strand 9
O
15 20parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
24 34first strand
Strand 2
K
24 34parallel
Strand 3
S
24 34parallel
Strand 4
Q
24 34parallel
Strand 5
W
24 34parallel
Strand 6
U
24 34parallel
Strand 7
a
24 34parallel
Strand 8
Y
24 34parallel
Strand 9
O
24 34parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
38 40first strand
Strand 2
K
38 40parallel
Strand 3
S
38 40parallel
Strand 4
Q
38 40parallel
Strand 5
W
38 40parallel
Strand 6
U
38 40parallel
Strand 7
a
38 40parallel
Strand 8
Y
38 40parallel
Strand 9
O
38 40parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
46 55first strand
Strand 2
K
46 55parallel
Strand 3
S
46 55parallel
Strand 4
Q
46 55parallel
Strand 5
W
46 55parallel
Strand 6
U
46 55parallel
Strand 7
a
46 55parallel
Strand 8
Y
46 55parallel
Strand 9
O
46 55parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
69 71first strand
Strand 2
K
69 71parallel
Strand 3
S
69 71parallel
Strand 4
Q
69 71parallel
Strand 5
W
69 71parallel
Strand 6
U
69 71parallel
Strand 7
a
69 71parallel
Strand 8
Y
69 71parallel
Strand 9
O
69 71parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
89 91first strand
Strand 2
K
89 91parallel
Strand 3
S
89 91parallel
Strand 4
Q
89 91parallel
Strand 5
W
89 91parallel
Strand 6
U
89 91parallel
Strand 7
a
89 91parallel
Strand 8
Y
89 91parallel
Strand 9
O
89 91parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
23 28first strand
Strand 2
L
23 28parallel
Strand 3
T
23 28parallel
Strand 4
R
23 28parallel
Strand 5
X
23 28parallel
Strand 6
V
23 28parallel
Strand 7
b
23 28parallel
Strand 8
Z
23 28parallel
Strand 9
P
23 28parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
38 57first strand
Strand 2
L
38 57parallel
Strand 3
T
38 57parallel
Strand 4
R
38 57parallel
Strand 5
X
38 57parallel
Strand 6
V
38 57parallel
Strand 7
b
38 57parallel
Strand 8
Z
38 57parallel
Strand 9
P
38 57parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
60 66first strand
Strand 2
L
60 66parallel
Strand 3
T
60 66parallel
Strand 4
R
60 66parallel
Strand 5
X
60 66parallel
Strand 6
V
60 66parallel
Strand 7
b
60 66parallel
Strand 8
Z
60 66parallel
Strand 9
P
60 66parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
69 71first strand
Strand 2
L
69 71parallel
Strand 3
T
69 71parallel
Strand 4
R
69 71parallel
Strand 5
X
69 71parallel
Strand 6
V
69 71parallel
Strand 7
b
69 71parallel
Strand 8
Z
69 71parallel
Strand 9
P
69 71parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
74 82first strand
Strand 2
L
74 82parallel
Strand 3
T
74 82parallel
Strand 4
R
74 82parallel
Strand 5
X
74 82parallel
Strand 6
V
74 82parallel
Strand 7
b
74 82parallel
Strand 8
Z
74 82parallel
Strand 9
P
74 82parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
88 96first strand
Strand 2
L
88 96parallel
Strand 3
T
88 96parallel
Strand 4
R
88 96parallel
Strand 5
X
88 96parallel
Strand 6
V
88 96parallel
Strand 7
b
88 96parallel
Strand 8
Z
88 96parallel
Strand 9
P
88 96parallel
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