Analysis of interatomic Contacts of Structural Units in PDB entry:
9CDB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CDB entry

There are 9 chains in PDB entry 9CDB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 600
B	MET 1	ASN 600
C	SER 2	ASN 600
D	MET 1	ASN 600
E	SER 2	ASN 600
F	MET 1	ASN 600
H	A 2	A 4
I	A 5	A 7
J	A 8	A 10

There are177 helices in PDB entry 9CDB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	41	50	Right-handed alpha
Helix 3	AA3	A	70	88	Right-handed alpha
Helix 4	AA4	A	103	118	Right-handed alpha
Helix 5	AA5	A	133	144	Right-handed alpha
Helix 6	AA6	A	161	167	Right-handed alpha
Helix 7	AA7	A	182	188	Right-handed alpha
Helix 8	AA8	A	208	214	Right-handed 310
Helix 9	AA9	A	215	224	Right-handed alpha
Helix 10	AB1	A	230	237	Right-handed alpha
Helix 11	AB2	A	247	249	Right-handed 310
Helix 12	AB3	A	253	262	Right-handed alpha
Helix 13	AB4	A	289	297	Right-handed alpha
Helix 14	AB5	A	307	325	Right-handed alpha
Helix 15	AB6	A	335	339	Right-handed 310
Helix 16	AB7	A	347	369	Right-handed alpha
Helix 17	AB8	A	390	405	Right-handed alpha
Helix 18	AB9	A	423	430	Right-handed 310
Helix 19	AC1	A	431	442	Right-handed alpha
Helix 20	AC2	A	454	464	Right-handed alpha
Helix 21	AC3	A	479	489	Right-handed alpha
Helix 22	AC4	A	496	504	Right-handed alpha
Helix 23	AC5	A	517	525	Right-handed alpha
Helix 24	AC6	A	534	539	Right-handed alpha
Helix 25	AC7	A	541	548	Right-handed alpha
Helix 26	AC8	A	548	553	Right-handed alpha
Helix 27	AC9	A	557	572	Right-handed alpha
Helix 28	AD1	A	575	596	Right-handed alpha
Helix 29	AD2	B	15	23	Right-handed alpha
Helix 30	AD3	B	41	51	Right-handed alpha
Helix 31	AD4	B	70	88	Right-handed alpha
Helix 32	AD5	B	103	118	Right-handed alpha
Helix 33	AD6	B	133	144	Right-handed alpha
Helix 34	AD7	B	157	163	Right-handed alpha
Helix 35	AD8	B	164	167	Right-handed 310
Helix 36	AD9	B	180	199	Right-handed alpha
Helix 37	AE1	B	215	224	Right-handed alpha
Helix 38	AE2	B	230	237	Right-handed alpha
Helix 39	AE3	B	252	262	Right-handed alpha
Helix 40	AE4	B	289	298	Right-handed alpha
Helix 41	AE5	B	307	325	Right-handed alpha
Helix 42	AE6	B	335	339	Right-handed 310
Helix 43	AE7	B	341	345	Right-handed 310
Helix 44	AE8	B	347	369	Right-handed alpha
Helix 45	AE9	B	391	405	Right-handed alpha
Helix 46	AF1	B	423	427	Right-handed 310
Helix 47	AF2	B	431	442	Right-handed alpha
Helix 48	AF3	B	454	464	Right-handed alpha
Helix 49	AF4	B	479	490	Right-handed alpha
Helix 50	AF5	B	496	504	Right-handed alpha
Helix 51	AF6	B	517	525	Right-handed alpha
Helix 52	AF7	B	534	539	Right-handed alpha
Helix 53	AF8	B	541	548	Right-handed alpha
Helix 54	AF9	B	548	553	Right-handed alpha
Helix 55	AG1	B	557	572	Right-handed alpha
Helix 56	AG2	B	575	600	Right-handed alpha
Helix 57	AG3	C	15	21	Right-handed alpha
Helix 58	AG4	C	41	51	Right-handed alpha
Helix 59	AG5	C	70	87	Right-handed alpha
Helix 60	AG6	C	103	118	Right-handed alpha
Helix 61	AG7	C	133	144	Right-handed alpha
Helix 62	AG8	C	161	167	Right-handed alpha
Helix 63	AG9	C	180	188	Right-handed alpha
Helix 64	AH1	C	208	214	Right-handed 310
Helix 65	AH2	C	215	224	Right-handed alpha
Helix 66	AH3	C	230	237	Right-handed alpha
Helix 67	AH4	C	247	249	Right-handed 310
Helix 68	AH5	C	253	261	Right-handed alpha
Helix 69	AH6	C	289	298	Right-handed alpha
Helix 70	AH7	C	307	325	Right-handed alpha
Helix 71	AH8	C	335	340	Right-handed 310
Helix 72	AH9	C	341	345	Right-handed 310
Helix 73	AI1	C	347	369	Right-handed alpha
Helix 74	AI2	C	390	404	Right-handed alpha
Helix 75	AI3	C	405	407	Right-handed 310
Helix 76	AI4	C	423	427	Right-handed 310
Helix 77	AI5	C	431	441	Right-handed alpha
Helix 78	AI6	C	454	464	Right-handed alpha
Helix 79	AI7	C	473	478	Right-handed 310
Helix 80	AI8	C	479	489	Right-handed alpha
Helix 81	AI9	C	496	504	Right-handed alpha
Helix 82	AJ1	C	517	525	Right-handed alpha
Helix 83	AJ2	C	534	539	Right-handed alpha
Helix 84	AJ3	C	541	548	Right-handed alpha
Helix 85	AJ4	C	548	553	Right-handed alpha
Helix 86	AJ5	C	557	572	Right-handed alpha
Helix 87	AJ6	C	575	598	Right-handed alpha
Helix 88	AJ7	D	12	14	Right-handed 310
Helix 89	AJ8	D	15	23	Right-handed alpha
Helix 90	AJ9	D	41	50	Right-handed alpha
Helix 91	AK1	D	70	87	Right-handed alpha
Helix 92	AK2	D	103	118	Right-handed alpha
Helix 93	AK3	D	133	144	Right-handed alpha
Helix 94	AK4	D	157	162	Right-handed alpha
Helix 95	AK5	D	163	167	Right-handed 310
Helix 96	AK6	D	180	199	Right-handed alpha
Helix 97	AK7	D	215	224	Right-handed alpha
Helix 98	AK8	D	227	229	Right-handed 310
Helix 99	AK9	D	230	237	Right-handed alpha
Helix 100	AL1	D	252	262	Right-handed alpha
Helix 101	AL2	D	289	298	Right-handed alpha
Helix 102	AL3	D	307	325	Right-handed alpha
Helix 103	AL4	D	335	340	Right-handed alpha
Helix 104	AL5	D	347	369	Right-handed alpha
Helix 105	AL6	D	391	405	Right-handed alpha
Helix 106	AL7	D	423	427	Right-handed 310
Helix 107	AL8	D	431	441	Right-handed alpha
Helix 108	AL9	D	454	464	Right-handed alpha
Helix 109	AM1	D	475	478	Right-handed 310
Helix 110	AM2	D	479	490	Right-handed alpha
Helix 111	AM3	D	496	504	Right-handed alpha
Helix 112	AM4	D	517	525	Right-handed alpha
Helix 113	AM5	D	534	539	Right-handed alpha
Helix 114	AM6	D	541	548	Right-handed alpha
Helix 115	AM7	D	548	553	Right-handed alpha
Helix 116	AM8	D	557	572	Right-handed alpha
Helix 117	AM9	D	575	599	Right-handed alpha
Helix 118	AN1	E	15	21	Right-handed alpha
Helix 119	AN2	E	42	51	Right-handed alpha
Helix 120	AN3	E	70	89	Right-handed alpha
Helix 121	AN4	E	103	118	Right-handed alpha
Helix 122	AN5	E	133	144	Right-handed alpha
Helix 123	AN6	E	161	167	Right-handed alpha
Helix 124	AN7	E	180	188	Right-handed alpha
Helix 125	AN8	E	208	214	Right-handed 310
Helix 126	AN9	E	215	224	Right-handed alpha
Helix 127	AO1	E	230	237	Right-handed alpha
Helix 128	AO2	E	247	249	Right-handed 310
Helix 129	AO3	E	253	261	Right-handed alpha
Helix 130	AO4	E	265	269	Right-handed 310
Helix 131	AO5	E	289	297	Right-handed alpha
Helix 132	AO6	E	307	325	Right-handed alpha
Helix 133	AO7	E	335	339	Right-handed 310
Helix 134	AO8	E	347	369	Right-handed alpha
Helix 135	AO9	E	390	404	Right-handed alpha
Helix 136	AP1	E	405	407	Right-handed 310
Helix 137	AP2	E	434	441	Right-handed alpha
Helix 138	AP3	E	454	464	Right-handed alpha
Helix 139	AP4	E	479	490	Right-handed alpha
Helix 140	AP5	E	496	504	Right-handed alpha
Helix 141	AP6	E	517	525	Right-handed alpha
Helix 142	AP7	E	534	539	Right-handed alpha
Helix 143	AP8	E	541	548	Right-handed alpha
Helix 144	AP9	E	548	553	Right-handed alpha
Helix 145	AQ1	E	557	572	Right-handed alpha
Helix 146	AQ2	E	575	596	Right-handed alpha
Helix 147	AQ3	F	14	23	Right-handed alpha
Helix 148	AQ4	F	42	51	Right-handed alpha
Helix 149	AQ5	F	70	88	Right-handed alpha
Helix 150	AQ6	F	103	118	Right-handed alpha
Helix 151	AQ7	F	136	144	Right-handed alpha
Helix 152	AQ8	F	157	162	Right-handed alpha
Helix 153	AQ9	F	163	166	Right-handed 310
Helix 154	AR1	F	180	199	Right-handed alpha
Helix 155	AR2	F	215	224	Right-handed alpha
Helix 156	AR3	F	227	229	Right-handed 310
Helix 157	AR4	F	230	237	Right-handed alpha
Helix 158	AR5	F	252	262	Right-handed alpha
Helix 159	AR6	F	289	297	Right-handed alpha
Helix 160	AR7	F	298	300	Right-handed 310
Helix 161	AR8	F	307	325	Right-handed alpha
Helix 162	AR9	F	335	340	Right-handed alpha
Helix 163	AS1	F	341	345	Right-handed 310
Helix 164	AS2	F	347	369	Right-handed alpha
Helix 165	AS3	F	390	405	Right-handed alpha
Helix 166	AS4	F	423	427	Right-handed 310
Helix 167	AS5	F	429	434	Right-handed 310
Helix 168	AS6	F	435	441	Right-handed alpha
Helix 169	AS7	F	454	464	Right-handed alpha
Helix 170	AS8	F	475	478	Right-handed 310
Helix 171	AS9	F	479	489	Right-handed alpha
Helix 172	AT1	F	496	504	Right-handed alpha
Helix 173	AT2	F	517	525	Right-handed alpha
Helix 174	AT3	F	534	539	Right-handed alpha
Helix 175	AT4	F	541	553	Right-handed alpha
Helix 176	AT5	F	557	572	Right-handed alpha
Helix 177	AT6	F	575	600	Right-handed alpha

There are 13 sheets in PDB entry 9CDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	29	34	parallel
Strand 3	A	4	9	parallel
Strand 4	A	96	98	parallel
Strand 5	A	121	126	parallel
Strand 6	A	147	150	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	245	first strand
Strand 2	A	327	334	parallel
Strand 3	A	375	383	parallel
Strand 4	A	413	419	parallel
Strand 5	A	444	447	parallel
Strand 6	A	469	471	parallel
Strand 7	A	492	495	parallel
Strand 8	A	527	530	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	29	35	parallel
Strand 3	B	4	8	parallel
Strand 4	B	96	98	parallel
Strand 5	B	119	126	parallel
Strand 6	B	147	154	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	245	first strand
Strand 2	B	327	334	parallel
Strand 3	B	375	381	parallel
Strand 4	B	413	418	parallel
Strand 5	B	444	447	parallel
Strand 6	B	469	471	parallel
Strand 7	B	492	495	parallel
Strand 8	B	527	530	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	29	34	parallel
Strand 3	C	4	8	parallel
Strand 4	C	96	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	147	150	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	245	first strand
Strand 2	C	327	334	parallel
Strand 3	C	375	383	parallel
Strand 4	C	413	419	parallel
Strand 5	C	444	447	parallel
Strand 6	C	469	471	parallel
Strand 7	C	492	495	parallel
Strand 8	C	528	530	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	29	35	parallel
Strand 3	D	4	8	parallel
Strand 4	D	96	98	parallel
Strand 5	D	121	127	parallel
Strand 6	D	146	152	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	245	first strand
Strand 2	D	327	334	parallel
Strand 3	D	375	381	parallel
Strand 4	D	413	418	parallel
Strand 5	D	444	447	parallel
Strand 6	D	469	471	parallel
Strand 7	D	492	494	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	62	first strand
Strand 2	E	29	35	parallel
Strand 3	E	4	8	parallel
Strand 4	E	96	98	parallel
Strand 5	E	119	126	parallel
Strand 6	E	147	154	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	245	first strand
Strand 2	E	327	334	parallel
Strand 3	E	375	381	parallel
Strand 4	E	413	418	parallel
Strand 5	E	444	447	parallel
Strand 6	E	469	471	parallel
Strand 7	E	492	495	parallel
Strand 8	E	528	530	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	62	first strand
Strand 2	F	29	35	parallel
Strand 3	F	5	8	parallel
Strand 4	F	96	98	parallel
Strand 5	F	119	126	parallel
Strand 6	F	147	154	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	245	first strand
Strand 2	F	327	334	parallel
Strand 3	F	375	381	parallel
Strand 4	F	413	418	parallel
Strand 5	F	444	449	parallel
Strand 6	F	469	472	parallel
Strand 7	F	492	495	parallel
Strand 8	F	527	530	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CDB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CDB