Analysis of interatomic Contacts of Structural Units in PDB entry:
9CDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CDF entry

There are 2 chains in PDB entry 9CDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ARG 551
B
 MET 1ARG 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9CDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
28 43Right-handed alpha
Helix 3
AA3
A
74 82Right-handed alpha
Helix 4
AA4
A
103 112Right-handed alpha
Helix 5
AA5
A
132 139Right-handed alpha
Helix 6
AA6
A
161 176Right-handed alpha
Helix 7
AA7
A
180 190Right-handed alpha
Helix 8
AA8
A
234 239Right-handed alpha
Helix 9
AA9
A
239 246Right-handed alpha
Helix 10
AB1
A
282 307Right-handed alpha
Helix 11
AB2
A
344 359Right-handed alpha
Helix 12
AB3
A
361 365Right-handed 310
Helix 13
AB4
A
397 401Right-handed 310
Helix 14
AB5
A
432 455Right-handed alpha
Helix 15
AB6
A
455 467Right-handed alpha
Helix 16
AB7
A
482 493Right-handed alpha
Helix 17
AB8
A
524 528Right-handed 310
Helix 18
AB9
B
15 26Right-handed alpha
Helix 19
AC1
B
28 43Right-handed alpha
Helix 20
AC2
B
74 80Right-handed alpha
Helix 21
AC3
B
103 111Right-handed alpha
Helix 22
AC4
B
131 139Right-handed alpha
Helix 23
AC5
B
161 176Right-handed alpha
Helix 24
AC6
B
179 189Right-handed alpha
Helix 25
AC7
B
239 247Right-handed alpha
Helix 26
AC8
B
283 307Right-handed alpha
Helix 27
AC9
B
344 359Right-handed alpha
Helix 28
AD1
B
397 402Right-handed alpha
Helix 29
AD2
B
432 455Right-handed alpha
Helix 30
AD3
B
460 468Right-handed alpha
Helix 31
AD4
B
482 493Right-handed alpha
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There are 9 sheets in PDB entry 9CDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
124 131anti-parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
197 201anti-parallel
Strand 5
A
64 68anti-parallel
Strand 6
A
47 49anti-parallel
Strand 7
A
254 256parallel
Strand 8
A
261 262anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
13 14parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
224 225anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 279first strand
Strand 2
A
366 372anti-parallel
Strand 3
A
410 411anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 395first strand
Strand 2
A
382 386anti-parallel
Strand 3
A
414 416parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
124 130anti-parallel
Strand 3
B
112 121anti-parallel
Strand 4
B
196 204anti-parallel
Strand 5
B
64 68anti-parallel
Strand 6
B
47 50anti-parallel
Strand 7
B
254 257parallel
Strand 8
B
260 262anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
224 225anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 395first strand
Strand 2
B
382 385anti-parallel
Strand 3
B
413 415parallel
Strand 4
B
366 372anti-parallel
Strand 5
B
272 279anti-parallel
Strand 6
B
547 548parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
505 506anti-parallel
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