Analysis of interatomic Contacts of Structural Units in PDB entry:
9CF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CF5 entry

There are 12 chains in PDB entry 9CF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	ARG 503
B	GLY 514	LYS 655
K	ASP 1	THR 109
L	GLU 1	SER 113
C	ASN 33	ARG 504
D	PHE 519	ASP 659
I	ASP 1	THR 109
J	GLU 1	SER 113
E	ASN 33	ARG 503
F	GLY 514	ASN 656
G	ASP 1	THR 109
H	GLU 1	SER 113

There are 41 helices in PDB entry 9CF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	74	Right-handed alpha
Helix 2	AA2	A	99	116	Right-handed alpha
Helix 3	AA3	A	335	354	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	386	391	Right-handed 310
Helix 6	AA6	A	475	483	Right-handed alpha
Helix 7	AA7	B	515	521	Right-handed alpha
Helix 8	AA8	B	522	524	Right-handed 310
Helix 9	AA9	B	529	536	Right-handed alpha
Helix 10	AB1	B	538	544	Right-handed alpha
Helix 11	AB2	B	560	567	Right-handed alpha
Helix 12	AB3	B	570	596	Right-handed alpha
Helix 13	AB4	B	619	623	Right-handed 310
Helix 14	AB5	B	627	635	Right-handed alpha
Helix 15	AB6	B	638	655	Right-handed alpha
Helix 16	AB7	L	83	87	Right-handed 310
Helix 17	AB8	C	64	74	Right-handed alpha
Helix 18	AB9	C	99	116	Right-handed alpha
Helix 19	AC1	C	335	353	Right-handed alpha
Helix 20	AC2	C	368	373	Right-handed alpha
Helix 21	AC3	C	476	481	Right-handed alpha
Helix 22	AC4	D	523	527	Right-handed 310
Helix 23	AC5	D	529	538	Right-handed alpha
Helix 24	AC6	D	564	597	Right-handed alpha
Helix 25	AC7	D	620	625	Right-handed alpha
Helix 26	AC8	D	627	635	Right-handed alpha
Helix 27	AC9	D	638	659	Right-handed alpha
Helix 28	AD1	J	83	87	Right-handed 310
Helix 29	AD2	E	64	74	Right-handed alpha
Helix 30	AD3	E	99	116	Right-handed alpha
Helix 31	AD4	E	335	353	Right-handed alpha
Helix 32	AD5	E	475	479	Right-handed 310
Helix 33	AD6	F	516	521	Right-handed alpha
Helix 34	AD7	F	533	540	Right-handed alpha
Helix 35	AD8	F	561	596	Right-handed alpha
Helix 36	AD9	F	618	625	Right-handed alpha
Helix 37	AE1	F	627	636	Right-handed alpha
Helix 38	AE2	F	638	649	Right-handed alpha
Helix 39	AE3	F	650	654	Right-handed 310
Helix 40	AE4	G	79	83	Right-handed 310
Helix 41	AE5	H	83	87	Right-handed 310

There are 38 sheets in PDB entry 9CF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	226	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	215	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	201	202	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	381	383	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	468	470	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	418	first strand
Strand 2	A	329	334	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	443	449	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	433	434	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	38	first strand
Strand 2	K	85	90	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	22	25	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	56	57	first strand
Strand 2	L	50	52	anti-parallel
Strand 3	L	33	39	anti-parallel
Strand 4	L	89	95	anti-parallel
Strand 5	L	107	108	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	72	first strand
Strand 2	L	77	82	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	487	492	anti-parallel
Strand 3	C	223	226	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	243	244	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	237	238	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	449	454	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	272	273	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	413	421	anti-parallel
Strand 4	C	328	334	anti-parallel
Strand 5	C	294	298	anti-parallel
Strand 6	C	443	447	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	359	361	anti-parallel
Strand 3	C	466	468	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	24	first strand
Strand 2	I	70	74	anti-parallel
Strand 3	I	63	67	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	33	38	anti-parallel
Strand 4	I	85	90	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	102	103	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	497	499	first strand
Strand 2	E	35	37	anti-parallel
Strand 3	F	605	609	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	488	491	anti-parallel
Strand 3	E	223	225	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	242	244	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	378	first strand
Strand 2	E	381	384	anti-parallel
Strand 3	E	413	421	anti-parallel
Strand 4	E	328	334	anti-parallel
Strand 5	E	294	298	anti-parallel
Strand 6	E	443	447	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	359	361	anti-parallel
Strand 3	E	466	467	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	45	49	anti-parallel
Strand 3	G	34	37	anti-parallel
Strand 4	G	87	90	anti-parallel
Strand 5	G	97	98	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	70	72	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	22	25	anti-parallel
Strand 3	H	77	78	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	95	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	81	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CF5