Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CFJ entry

There are 2 chains in PDB entry 9CFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2114TYR 2242
A
 GLY 2244SER 2389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9CFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2116 2125Right-handed alpha
Helix 2
AA2
A
2129 2142Right-handed alpha
Helix 3
AA3
A
2149 2153Right-handed 310
Helix 4
AA4
A
2182 2192Right-handed alpha
Helix 5
AA5
A
2216 2233Right-handed alpha
Helix 6
AA6
A
2243 2259Right-handed alpha
Helix 7
AA7
A
2277 2292Right-handed alpha
Helix 8
AA8
A
2293 2298Right-handed alpha
Helix 9
AA9
A
2301 2318Right-handed alpha
Helix 10
AB1
A
2368 2372Right-handed 310
Helix 11
AB2
A
2374 2387Right-handed alpha
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There are 2 sheets in PDB entry 9CFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2146 2147first strand
Strand 2
A
2213 2214parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2160 2166first strand
Strand 2
A
2197 2201anti-parallel
Strand 3
A
2170 2174parallel
Strand 4
A
2237 2242parallel
Strand 5
A
2265 2269parallel
Strand 6
A
2327 2332parallel
Strand 7
A
2359 2363parallel
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