Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CFL entry

There are 4 chains in PDB entry 9CFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 270
B
 MET 1LYS 264
C
 MET 1LEU 270
D
 MET 1LYS 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9CFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
14 30Right-handed alpha
Helix 3
AA3
A
35 37Right-handed 310
Helix 4
AA4
A
38 56Right-handed alpha
Helix 5
AA5
A
69 79Right-handed alpha
Helix 6
AA6
A
80 93Right-handed alpha
Helix 7
AA7
A
93 99Right-handed alpha
Helix 8
AA8
A
108 110Right-handed 310
Helix 9
AA9
A
111 137Right-handed alpha
Helix 10
AB1
A
143 147Right-handed 310
Helix 11
AB2
A
148 174Right-handed alpha
Helix 12
AB3
A
176 191Right-handed alpha
Helix 13
AB4
A
206 211Right-handed alpha
Helix 14
AB5
A
214 228Right-handed alpha
Helix 15
AB6
A
237 263Right-handed alpha
Helix 16
AB7
A
265 270Right-handed alpha
Helix 17
AB8
B
19 29Right-handed alpha
Helix 18
AB9
B
62 71Right-handed alpha
Helix 19
AC1
B
101 114Right-handed alpha
Helix 20
AC2
B
116 132Right-handed alpha
Helix 21
AC3
B
133 139Right-handed 310
Helix 22
AC4
B
140 144Right-handed 310
Helix 23
AC5
B
145 158Right-handed alpha
Helix 24
AC6
B
175 192Right-handed alpha
Helix 25
AC7
B
202 210Right-handed alpha
Helix 26
AC8
B
227 243Right-handed alpha
Helix 27
AC9
B
245 260Right-handed alpha
Helix 28
AD1
C
2 13Right-handed alpha
Helix 29
AD2
C
14 30Right-handed alpha
Helix 30
AD3
C
35 37Right-handed 310
Helix 31
AD4
C
38 56Right-handed alpha
Helix 32
AD5
C
69 79Right-handed alpha
Helix 33
AD6
C
80 93Right-handed alpha
Helix 34
AD7
C
93 99Right-handed alpha
Helix 35
AD8
C
108 110Right-handed 310
Helix 36
AD9
C
111 137Right-handed alpha
Helix 37
AE1
C
143 147Right-handed 310
Helix 38
AE2
C
148 174Right-handed alpha
Helix 39
AE3
C
176 191Right-handed alpha
Helix 40
AE4
C
206 211Right-handed alpha
Helix 41
AE5
C
214 228Right-handed alpha
Helix 42
AE6
C
237 263Right-handed alpha
Helix 43
AE7
C
265 270Right-handed alpha
Helix 44
AE8
D
19 29Right-handed alpha
Helix 45
AE9
D
62 71Right-handed alpha
Helix 46
AF1
D
101 114Right-handed alpha
Helix 47
AF2
D
116 132Right-handed alpha
Helix 48
AF3
D
133 139Right-handed 310
Helix 49
AF4
D
140 144Right-handed 310
Helix 50
AF5
D
145 158Right-handed alpha
Helix 51
AF6
D
175 192Right-handed alpha
Helix 52
AF7
D
202 210Right-handed alpha
Helix 53
AF8
D
227 243Right-handed alpha
Helix 54
AF9
D
245 260Right-handed alpha
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There are 4 sheets in PDB entry 9CFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
3 15anti-parallel
Strand 3
B
35 48anti-parallel
Strand 4
B
261 263anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
164 168parallel
Strand 3
B
195 199parallel
Strand 4
B
52 56parallel
Strand 5
B
212 217parallel
Strand 6
B
220 226anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 83first strand
Strand 2
D
3 15anti-parallel
Strand 3
D
35 48anti-parallel
Strand 4
D
261 263anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 90first strand
Strand 2
D
164 168parallel
Strand 3
D
195 199parallel
Strand 4
D
52 56parallel
Strand 5
D
212 217parallel
Strand 6
D
220 226anti-parallel
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