Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CFV entry

There are 5 chains in PDB entry 9CFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 4	CYS 374
C	ASP 3	CYS 374
D	GLU 4	CYS 374
P	GLY 12	LEU 720
R	MET 1	ALA 148

There are108 helices in PDB entry 9CFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	61	Right-handed alpha
Helix 2	AA2	B	78	92	Right-handed alpha
Helix 3	AA3	B	97	101	Right-handed 310
Helix 4	AA4	B	112	126	Right-handed alpha
Helix 5	AA5	B	137	145	Right-handed alpha
Helix 6	AA6	B	172	175	Right-handed 310
Helix 7	AA7	B	181	193	Right-handed alpha
Helix 8	AA8	B	194	196	Right-handed 310
Helix 9	AA9	B	202	217	Right-handed alpha
Helix 10	AB1	B	222	233	Right-handed alpha
Helix 11	AB2	B	234	237	Right-handed 310
Helix 12	AB3	B	252	257	Right-handed alpha
Helix 13	AB4	B	258	262	Right-handed 310
Helix 14	AB5	B	263	268	Right-handed 310
Helix 15	AB6	B	273	285	Right-handed alpha
Helix 16	AB7	B	286	288	Right-handed 310
Helix 17	AB8	B	289	295	Right-handed alpha
Helix 18	AB9	B	301	305	Right-handed 310
Helix 19	AC1	B	308	321	Right-handed alpha
Helix 20	AC2	B	334	336	Right-handed 310
Helix 21	AC3	B	337	349	Right-handed alpha
Helix 22	AC4	B	350	355	Right-handed 310
Helix 23	AC5	B	359	366	Right-handed alpha
Helix 24	AC6	B	369	374	Right-handed alpha
Helix 25	AC7	C	55	62	Right-handed alpha
Helix 26	AC8	C	78	92	Right-handed alpha
Helix 27	AC9	C	97	101	Right-handed 310
Helix 28	AD1	C	112	126	Right-handed alpha
Helix 29	AD2	C	137	146	Right-handed alpha
Helix 30	AD3	C	181	194	Right-handed alpha
Helix 31	AD4	C	195	197	Right-handed 310
Helix 32	AD5	C	202	217	Right-handed alpha
Helix 33	AD6	C	222	233	Right-handed alpha
Helix 34	AD7	C	252	260	Right-handed alpha
Helix 35	AD8	C	261	262	Right-handed 310
Helix 36	AD9	C	263	268	Right-handed 310
Helix 37	AE1	C	273	284	Right-handed alpha
Helix 38	AE2	C	288	295	Right-handed alpha
Helix 39	AE3	C	301	305	Right-handed 310
Helix 40	AE4	C	308	321	Right-handed alpha
Helix 41	AE5	C	332	336	Right-handed 310
Helix 42	AE6	C	337	349	Right-handed alpha
Helix 43	AE7	C	350	353	Right-handed 310
Helix 44	AE8	C	359	365	Right-handed alpha
Helix 45	AE9	C	366	368	Right-handed 310
Helix 46	AF1	C	369	374	Right-handed alpha
Helix 47	AF2	D	55	61	Right-handed alpha
Helix 48	AF3	D	78	92	Right-handed alpha
Helix 49	AF4	D	97	101	Right-handed 310
Helix 50	AF5	D	112	126	Right-handed alpha
Helix 51	AF6	D	137	146	Right-handed alpha
Helix 52	AF7	D	181	194	Right-handed alpha
Helix 53	AF8	D	195	197	Right-handed 310
Helix 54	AF9	D	202	217	Right-handed alpha
Helix 55	AG1	D	222	233	Right-handed alpha
Helix 56	AG2	D	252	260	Right-handed alpha
Helix 57	AG3	D	261	262	Right-handed 310
Helix 58	AG4	D	263	268	Right-handed 310
Helix 59	AG5	D	273	285	Right-handed alpha
Helix 60	AG6	D	286	295	Right-handed alpha
Helix 61	AG7	D	301	305	Right-handed 310
Helix 62	AG8	D	308	321	Right-handed alpha
Helix 63	AG9	D	337	349	Right-handed alpha
Helix 64	AH1	D	350	353	Right-handed 310
Helix 65	AH2	D	359	366	Right-handed alpha
Helix 66	AH3	D	368	374	Right-handed alpha
Helix 67	AH4	P	15	19	Right-handed 310
Helix 68	AH5	P	24	38	Right-handed alpha
Helix 69	AH6	P	58	61	Right-handed 310
Helix 70	AH7	P	62	70	Right-handed alpha
Helix 71	AH8	P	80	95	Right-handed alpha
Helix 72	AH9	P	110	125	Right-handed alpha
Helix 73	AI1	P	128	142	Right-handed alpha
Helix 74	AI2	P	142	150	Right-handed alpha
Helix 75	AI3	P	188	193	Right-handed 310
Helix 76	AI4	P	203	212	Right-handed alpha
Helix 77	AI5	P	213	220	Right-handed alpha
Helix 78	AI6	P	225	228	Right-handed 310
Helix 79	AI7	P	229	234	Right-handed alpha
Helix 80	AI8	P	244	259	Right-handed alpha
Helix 81	AI9	P	262	281	Right-handed alpha
Helix 82	AJ1	P	296	307	Right-handed alpha
Helix 83	AJ2	P	310	318	Right-handed alpha
Helix 84	AJ3	P	335	364	Right-handed alpha
Helix 85	AJ4	P	397	430	Right-handed alpha
Helix 86	AJ5	P	440	450	Right-handed alpha
Helix 87	AJ6	P	454	465	Right-handed alpha
Helix 88	AJ7	P	470	482	Right-handed alpha
Helix 89	AJ8	P	497	501	Right-handed 310
Helix 90	AJ9	P	522	528	Right-handed alpha
Helix 91	AK1	P	532	540	Right-handed alpha
Helix 92	AK2	P	546	551	Right-handed alpha
Helix 93	AK3	P	552	558	Right-handed 310
Helix 94	AK4	P	564	583	Right-handed alpha
Helix 95	AK5	P	603	614	Right-handed alpha
Helix 96	AK6	P	615	625	Right-handed alpha
Helix 97	AK7	P	633	641	Right-handed alpha
Helix 98	AK8	P	642	648	Right-handed 310
Helix 99	AK9	P	654	666	Right-handed alpha
Helix 100	AL1	P	684	719	Right-handed alpha
Helix 101	AL2	R	6	22	Right-handed alpha
Helix 102	AL3	R	32	40	Right-handed alpha
Helix 103	AL4	R	45	57	Right-handed alpha
Helix 104	AL5	R	66	77	Right-handed alpha
Helix 105	AL6	R	82	94	Right-handed alpha
Helix 106	AL7	R	103	112	Right-handed alpha
Helix 107	AL8	R	118	130	Right-handed alpha
Helix 108	AL9	R	139	147	Right-handed alpha

There are 26 sheets in PDB entry 9CFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	45	first strand
Strand 2	P	48	52	anti-parallel
Strand 3	P	584	591	parallel
Strand 4	P	99	105	parallel
Strand 5	P	379	386	parallel
Strand 6	P	164	172	anti-parallel
Strand 7	P	177	185	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	151	152	first strand
Strand 2	P	160	161	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	284	286	first strand
Strand 2	P	292	294	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	320	325	first strand
Strand 2	P	328	333	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	488	490	first strand
Strand 2	P	506	511	anti-parallel
Strand 3	P	514	519	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	629	632	first strand
Strand 2	P	679	682	anti-parallel
Strand 3	P	673	675	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	27	29	first strand
Strand 2	R	63	65	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	100	102	first strand
Strand 2	R	136	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFV