Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CFX entry

There are 5 chains in PDB entry 9CFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 4	CYS 374
C	ASP 3	CYS 374
D	GLU 4	CYS 374
P	MET 1	LEU 720
R	MET 1	ALA 148

There are105 helices in PDB entry 9CFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	61	Right-handed alpha
Helix 2	AA2	B	78	92	Right-handed alpha
Helix 3	AA3	B	97	101	Right-handed 310
Helix 4	AA4	B	112	126	Right-handed alpha
Helix 5	AA5	B	137	146	Right-handed alpha
Helix 6	AA6	B	181	193	Right-handed alpha
Helix 7	AA7	B	194	197	Right-handed 310
Helix 8	AA8	B	202	217	Right-handed alpha
Helix 9	AA9	B	222	233	Right-handed alpha
Helix 10	AB1	B	234	237	Right-handed 310
Helix 11	AB2	B	252	263	Right-handed alpha
Helix 12	AB3	B	273	285	Right-handed alpha
Helix 13	AB4	B	286	295	Right-handed alpha
Helix 14	AB5	B	301	305	Right-handed 310
Helix 15	AB6	B	308	319	Right-handed alpha
Helix 16	AB7	B	337	349	Right-handed alpha
Helix 17	AB8	B	350	355	Right-handed 310
Helix 18	AB9	B	359	366	Right-handed alpha
Helix 19	AC1	B	369	374	Right-handed alpha
Helix 20	AC2	C	55	60	Right-handed alpha
Helix 21	AC3	C	61	63	Right-handed 310
Helix 22	AC4	C	78	92	Right-handed alpha
Helix 23	AC5	C	97	101	Right-handed 310
Helix 24	AC6	C	112	126	Right-handed alpha
Helix 25	AC7	C	137	146	Right-handed alpha
Helix 26	AC8	C	181	193	Right-handed alpha
Helix 27	AC9	C	194	197	Right-handed 310
Helix 28	AD1	C	204	214	Right-handed alpha
Helix 29	AD2	C	222	231	Right-handed alpha
Helix 30	AD3	C	251	255	Right-handed 310
Helix 31	AD4	C	257	262	Right-handed 310
Helix 32	AD5	C	263	268	Right-handed 310
Helix 33	AD6	C	273	283	Right-handed alpha
Helix 34	AD7	C	289	295	Right-handed alpha
Helix 35	AD8	C	301	305	Right-handed 310
Helix 36	AD9	C	308	319	Right-handed alpha
Helix 37	AE1	C	337	349	Right-handed alpha
Helix 38	AE2	C	350	355	Right-handed 310
Helix 39	AE3	C	359	365	Right-handed alpha
Helix 40	AE4	C	368	374	Right-handed alpha
Helix 41	AE5	D	55	61	Right-handed alpha
Helix 42	AE6	D	78	92	Right-handed alpha
Helix 43	AE7	D	97	101	Right-handed 310
Helix 44	AE8	D	112	126	Right-handed alpha
Helix 45	AE9	D	137	145	Right-handed alpha
Helix 46	AF1	D	172	175	Right-handed 310
Helix 47	AF2	D	181	194	Right-handed alpha
Helix 48	AF3	D	202	217	Right-handed alpha
Helix 49	AF4	D	222	232	Right-handed alpha
Helix 50	AF5	D	252	257	Right-handed alpha
Helix 51	AF6	D	258	262	Right-handed 310
Helix 52	AF7	D	263	268	Right-handed 310
Helix 53	AF8	D	273	284	Right-handed alpha
Helix 54	AF9	D	289	295	Right-handed alpha
Helix 55	AG1	D	301	305	Right-handed 310
Helix 56	AG2	D	308	321	Right-handed alpha
Helix 57	AG3	D	337	346	Right-handed alpha
Helix 58	AG4	D	347	348	Right-handed 310
Helix 59	AG5	D	349	353	Right-handed 310
Helix 60	AG6	D	359	366	Right-handed alpha
Helix 61	AG7	D	368	374	Right-handed alpha
Helix 62	AG8	P	1	8	Right-handed 310
Helix 63	AG9	P	15	19	Right-handed 310
Helix 64	AH1	P	24	38	Right-handed alpha
Helix 65	AH2	P	58	61	Right-handed 310
Helix 66	AH3	P	62	67	Right-handed alpha
Helix 67	AH4	P	80	96	Right-handed alpha
Helix 68	AH5	P	110	125	Right-handed alpha
Helix 69	AH6	P	128	142	Right-handed alpha
Helix 70	AH7	P	142	150	Right-handed alpha
Helix 71	AH8	P	188	193	Right-handed 310
Helix 72	AH9	P	203	211	Right-handed alpha
Helix 73	AI1	P	213	219	Right-handed alpha
Helix 74	AI2	P	225	228	Right-handed 310
Helix 75	AI3	P	229	234	Right-handed alpha
Helix 76	AI4	P	244	259	Right-handed alpha
Helix 77	AI5	P	262	281	Right-handed alpha
Helix 78	AI6	P	296	307	Right-handed alpha
Helix 79	AI7	P	310	318	Right-handed alpha
Helix 80	AI8	P	335	367	Right-handed alpha
Helix 81	AI9	P	397	430	Right-handed alpha
Helix 82	AJ1	P	440	450	Right-handed alpha
Helix 83	AJ2	P	454	463	Right-handed alpha
Helix 84	AJ3	P	470	482	Right-handed alpha
Helix 85	AJ4	P	497	501	Right-handed 310
Helix 86	AJ5	P	522	528	Right-handed alpha
Helix 87	AJ6	P	532	540	Right-handed alpha
Helix 88	AJ7	P	544	551	Right-handed alpha
Helix 89	AJ8	P	552	558	Right-handed 310
Helix 90	AJ9	P	564	583	Right-handed alpha
Helix 91	AK1	P	603	614	Right-handed alpha
Helix 92	AK2	P	615	625	Right-handed alpha
Helix 93	AK3	P	633	641	Right-handed alpha
Helix 94	AK4	P	644	648	Right-handed 310
Helix 95	AK5	P	654	666	Right-handed alpha
Helix 96	AK6	P	684	719	Right-handed alpha
Helix 97	AK7	R	6	22	Right-handed alpha
Helix 98	AK8	R	31	40	Right-handed alpha
Helix 99	AK9	R	45	54	Right-handed alpha
Helix 100	AL1	R	55	60	Right-handed 310
Helix 101	AL2	R	66	77	Right-handed alpha
Helix 102	AL3	R	82	94	Right-handed alpha
Helix 103	AL4	R	103	113	Right-handed alpha
Helix 104	AL5	R	118	130	Right-handed alpha
Helix 105	AL6	R	139	147	Right-handed alpha

There are 26 sheets in PDB entry 9CFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	154	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	45	first strand
Strand 2	P	48	52	anti-parallel
Strand 3	P	584	591	parallel
Strand 4	P	99	105	parallel
Strand 5	P	379	386	parallel
Strand 6	P	164	172	anti-parallel
Strand 7	P	177	185	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	151	152	first strand
Strand 2	P	160	161	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	284	286	first strand
Strand 2	P	292	294	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	320	325	first strand
Strand 2	P	328	333	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	488	490	first strand
Strand 2	P	506	511	anti-parallel
Strand 3	P	514	519	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	629	632	first strand
Strand 2	P	679	682	anti-parallel
Strand 3	P	673	675	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	27	29	first strand
Strand 2	R	63	65	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	100	102	first strand
Strand 2	R	136	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CFX