Analysis of interatomic Contacts of Structural Units in PDB entry:
9CG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CG3 entry

There are 20 chains in PDB entry 9CG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASN 80
C	HIS 80	VAL 273
D	THR 5	HIS 58
E	GLU 23	LEU 90
F	GLY 11	LYS 111
G	VAL 2	PHE 52
H	ASP 86	PRO 324
J	THR 2	TRP 379
K	GLN 36	LEU 453
L	ALA 36	PHE 480
P	HIS 80	GLY 274
Q	ALA 4	HIS 58
R	GLU 24	LYS 91
S	SER 8	LYS 111
T	VAL 2	PHE 52
U	ASP 86	PRO 324
V	THR 2	TRP 379
W	PRO 35	LEU 453
Y	ALA 36	PHE 480
N	ARG 3	ASP 81

There are177 helices in PDB entry 9CG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	47	Right-handed alpha
Helix 2	AA2	A	49	72	Right-handed alpha
Helix 3	AA3	A	74	79	Right-handed 310
Helix 4	AA4	C	102	140	Right-handed alpha
Helix 5	AA5	C	143	149	Right-handed alpha
Helix 6	AA6	C	180	190	Right-handed alpha
Helix 7	AA7	C	201	205	Right-handed 310
Helix 8	AA8	D	6	14	Right-handed alpha
Helix 9	AA9	D	17	48	Right-handed alpha
Helix 10	AB1	D	52	57	Right-handed alpha
Helix 11	AB2	E	28	39	Right-handed alpha
Helix 12	AB3	E	40	60	Right-handed alpha
Helix 13	AB4	E	67	85	Right-handed alpha
Helix 14	AB5	F	12	25	Right-handed alpha
Helix 15	AB6	F	26	29	Right-handed 310
Helix 16	AB7	F	33	38	Right-handed alpha
Helix 17	AB8	F	41	50	Right-handed alpha
Helix 18	AB9	F	52	73	Right-handed alpha
Helix 19	AC1	F	77	81	Right-handed 310
Helix 20	AC2	F	83	87	Right-handed 310
Helix 21	AC3	F	90	110	Right-handed alpha
Helix 22	AC4	G	7	37	Right-handed alpha
Helix 23	AC5	H	96	100	Right-handed 310
Helix 24	AC6	H	106	120	Right-handed alpha
Helix 25	AC7	H	121	124	Right-handed 310
Helix 26	AC8	H	141	151	Right-handed alpha
Helix 27	AC9	H	160	162	Right-handed 310
Helix 28	AD1	H	181	189	Right-handed alpha
Helix 29	AD2	H	200	204	Right-handed 310
Helix 30	AD3	H	207	217	Right-handed alpha
Helix 31	AD4	H	262	279	Right-handed alpha
Helix 32	AD5	H	281	316	Right-handed alpha
Helix 33	AD6	J	3	7	Right-handed 310
Helix 34	AD7	J	8	18	Right-handed alpha
Helix 35	AD8	J	28	30	Right-handed 310
Helix 36	AD9	J	31	53	Right-handed alpha
Helix 37	AE1	J	61	72	Right-handed alpha
Helix 38	AE2	J	75	104	Right-handed alpha
Helix 39	AE3	J	105	108	Right-handed 310
Helix 40	AE4	J	109	133	Right-handed alpha
Helix 41	AE5	J	136	149	Right-handed alpha
Helix 42	AE6	J	150	153	Right-handed 310
Helix 43	AE7	J	157	166	Right-handed alpha
Helix 44	AE8	J	171	204	Right-handed alpha
Helix 45	AE9	J	213	215	Right-handed 310
Helix 46	AF1	J	223	245	Right-handed alpha
Helix 47	AF2	J	252	257	Right-handed 310
Helix 48	AF3	J	271	273	Right-handed 310
Helix 49	AF4	J	274	284	Right-handed alpha
Helix 50	AF5	J	286	308	Right-handed alpha
Helix 51	AF6	J	318	341	Right-handed alpha
Helix 52	AF7	J	344	364	Right-handed alpha
Helix 53	AF8	J	364	377	Right-handed alpha
Helix 54	AF9	K	68	72	Right-handed 310
Helix 55	AG1	K	78	84	Right-handed alpha
Helix 56	AG2	K	95	107	Right-handed alpha
Helix 57	AG3	K	129	142	Right-handed alpha
Helix 58	AG4	K	147	155	Right-handed alpha
Helix 59	AG5	K	155	166	Right-handed alpha
Helix 60	AG6	K	168	182	Right-handed alpha
Helix 61	AG7	K	193	197	Right-handed 310
Helix 62	AG8	K	201	213	Right-handed alpha
Helix 63	AG9	K	214	216	Right-handed 310
Helix 64	AH1	K	226	237	Right-handed alpha
Helix 65	AH2	K	280	294	Right-handed alpha
Helix 66	AH3	K	307	317	Right-handed alpha
Helix 67	AH4	K	346	364	Right-handed alpha
Helix 68	AH5	K	367	388	Right-handed alpha
Helix 69	AH6	K	388	403	Right-handed alpha
Helix 70	AH7	K	408	419	Right-handed alpha
Helix 71	AH8	K	420	434	Right-handed alpha
Helix 72	AH9	L	37	45	Right-handed alpha
Helix 73	AI1	L	78	82	Right-handed 310
Helix 74	AI2	L	88	98	Right-handed alpha
Helix 75	AI3	L	105	117	Right-handed alpha
Helix 76	AI4	L	139	152	Right-handed alpha
Helix 77	AI5	L	157	176	Right-handed alpha
Helix 78	AI6	L	178	193	Right-handed alpha
Helix 79	AI7	L	204	210	Right-handed alpha
Helix 80	AI8	L	212	224	Right-handed alpha
Helix 81	AI9	L	238	250	Right-handed alpha
Helix 82	AJ1	L	299	311	Right-handed alpha
Helix 83	AJ2	L	364	382	Right-handed alpha
Helix 84	AJ3	L	384	403	Right-handed alpha
Helix 85	AJ4	L	405	420	Right-handed alpha
Helix 86	AJ5	L	425	436	Right-handed alpha
Helix 87	AJ6	L	437	449	Right-handed alpha
Helix 88	AJ7	L	467	475	Right-handed alpha
Helix 89	AJ8	P	102	140	Right-handed alpha
Helix 90	AJ9	P	143	149	Right-handed alpha
Helix 91	AK1	P	180	190	Right-handed alpha
Helix 92	AK2	P	201	205	Right-handed 310
Helix 93	AK3	Q	5	14	Right-handed alpha
Helix 94	AK4	Q	17	48	Right-handed alpha
Helix 95	AK5	Q	52	58	Right-handed alpha
Helix 96	AK6	R	28	39	Right-handed alpha
Helix 97	AK7	R	40	60	Right-handed alpha
Helix 98	AK8	R	67	86	Right-handed alpha
Helix 99	AK9	S	11	25	Right-handed alpha
Helix 100	AL1	S	26	29	Right-handed 310
Helix 101	AL2	S	33	38	Right-handed alpha
Helix 102	AL3	S	41	50	Right-handed alpha
Helix 103	AL4	S	52	72	Right-handed alpha
Helix 104	AL5	S	77	81	Right-handed 310
Helix 105	AL6	S	91	111	Right-handed alpha
Helix 106	AL7	T	7	37	Right-handed alpha
Helix 107	AL8	T	38	43	Right-handed alpha
Helix 108	AL9	T	48	52	Right-handed 310
Helix 109	AM1	U	96	100	Right-handed 310
Helix 110	AM2	U	106	120	Right-handed alpha
Helix 111	AM3	U	121	124	Right-handed 310
Helix 112	AM4	U	141	151	Right-handed alpha
Helix 113	AM5	U	159	163	Right-handed 310
Helix 114	AM6	U	181	189	Right-handed alpha
Helix 115	AM7	U	199	204	Right-handed alpha
Helix 116	AM8	U	207	217	Right-handed alpha
Helix 117	AM9	U	262	279	Right-handed alpha
Helix 118	AN1	U	281	317	Right-handed alpha
Helix 119	AN2	V	3	7	Right-handed 310
Helix 120	AN3	V	8	18	Right-handed alpha
Helix 121	AN4	V	28	31	Right-handed 310
Helix 122	AN5	V	32	53	Right-handed alpha
Helix 123	AN6	V	61	72	Right-handed alpha
Helix 124	AN7	V	75	104	Right-handed alpha
Helix 125	AN8	V	105	108	Right-handed 310
Helix 126	AN9	V	109	133	Right-handed alpha
Helix 127	AO1	V	136	149	Right-handed alpha
Helix 128	AO2	V	150	153	Right-handed 310
Helix 129	AO3	V	157	166	Right-handed alpha
Helix 130	AO4	V	171	204	Right-handed alpha
Helix 131	AO5	V	213	215	Right-handed 310
Helix 132	AO6	V	223	245	Right-handed alpha
Helix 133	AO7	V	271	273	Right-handed 310
Helix 134	AO8	V	274	284	Right-handed alpha
Helix 135	AO9	V	286	304	Right-handed alpha
Helix 136	AP1	V	305	308	Right-handed 310
Helix 137	AP2	V	318	341	Right-handed alpha
Helix 138	AP3	V	344	362	Right-handed alpha
Helix 139	AP4	V	364	377	Right-handed alpha
Helix 140	AP5	W	68	72	Right-handed 310
Helix 141	AP6	W	78	86	Right-handed alpha
Helix 142	AP7	W	95	107	Right-handed alpha
Helix 143	AP8	W	129	143	Right-handed alpha
Helix 144	AP9	W	147	166	Right-handed alpha
Helix 145	AQ1	W	168	182	Right-handed alpha
Helix 146	AQ2	W	193	197	Right-handed 310
Helix 147	AQ3	W	201	213	Right-handed alpha
Helix 148	AQ4	W	214	216	Right-handed 310
Helix 149	AQ5	W	226	238	Right-handed alpha
Helix 150	AQ6	W	280	294	Right-handed alpha
Helix 151	AQ7	W	307	315	Right-handed alpha
Helix 152	AQ8	W	346	364	Right-handed alpha
Helix 153	AQ9	W	367	388	Right-handed alpha
Helix 154	AR1	W	388	403	Right-handed alpha
Helix 155	AR2	W	408	419	Right-handed alpha
Helix 156	AR3	W	420	434	Right-handed alpha
Helix 157	AR4	Y	37	43	Right-handed alpha
Helix 158	AR5	Y	78	82	Right-handed 310
Helix 159	AR6	Y	83	87	Right-handed 310
Helix 160	AR7	Y	88	98	Right-handed alpha
Helix 161	AR8	Y	105	116	Right-handed alpha
Helix 162	AR9	Y	139	152	Right-handed alpha
Helix 163	AS1	Y	157	178	Right-handed alpha
Helix 164	AS2	Y	178	193	Right-handed alpha
Helix 165	AS3	Y	195	199	Right-handed 310
Helix 166	AS4	Y	204	210	Right-handed alpha
Helix 167	AS5	Y	212	224	Right-handed alpha
Helix 168	AS6	Y	238	250	Right-handed alpha
Helix 169	AS7	Y	299	311	Right-handed alpha
Helix 170	AS8	Y	364	382	Right-handed alpha
Helix 171	AS9	Y	384	403	Right-handed alpha
Helix 172	AT1	Y	405	420	Right-handed alpha
Helix 173	AT2	Y	425	436	Right-handed alpha
Helix 174	AT3	Y	437	449	Right-handed alpha
Helix 175	AT4	Y	467	474	Right-handed alpha
Helix 176	AT5	N	33	71	Right-handed alpha
Helix 177	AT6	N	75	80	Right-handed alpha

There are 21 sheets in PDB entry 9CG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	318	321	first strand
Strand 2	A	12	18	anti-parallel
Strand 3	L	274	279	anti-parallel
Strand 4	L	455	459	parallel
Strand 5	L	285	292	anti-parallel
Strand 6	L	352	360	anti-parallel
Strand 7	L	340	347	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	271	273	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	178	anti-parallel
Strand 3	C	210	213	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	234	235	anti-parallel
Strand 3	C	242	243	anti-parallel
Strand 4	C	249	251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	158	first strand
Strand 2	H	164	167	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	241	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	24	first strand
Strand 2	J	217	218	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	48	51	anti-parallel
Strand 3	K	218	222	parallel
Strand 4	K	58	65	anti-parallel
Strand 5	K	119	126	anti-parallel
Strand 6	K	109	114	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	257	261	first strand
Strand 2	K	436	442	parallel
Strand 3	K	266	275	anti-parallel
Strand 4	K	334	343	anti-parallel
Strand 5	K	322	324	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	257	261	first strand
Strand 2	K	436	442	parallel
Strand 3	K	266	275	anti-parallel
Strand 4	K	334	343	anti-parallel
Strand 5	K	327	329	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	52	first strand
Strand 2	L	58	61	anti-parallel
Strand 3	L	229	233	parallel
Strand 4	L	68	75	anti-parallel
Strand 5	L	129	136	anti-parallel
Strand 6	L	119	124	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	153	156	first strand
Strand 2	P	270	273	anti-parallel
Strand 3	P	264	267	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	164	169	first strand
Strand 2	P	172	177	anti-parallel
Strand 3	P	211	214	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	225	226	first strand
Strand 2	P	234	235	anti-parallel
Strand 3	P	242	243	anti-parallel
Strand 4	P	249	251	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	154	155	first strand
Strand 2	U	166	167	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	232	233	first strand
Strand 2	U	241	242	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	318	321	first strand
Strand 2	N	14	18	anti-parallel
Strand 3	Y	274	277	anti-parallel
Strand 4	Y	455	459	parallel
Strand 5	Y	285	292	anti-parallel
Strand 6	Y	352	360	anti-parallel
Strand 7	Y	340	347	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	23	24	first strand
Strand 2	V	217	218	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	41	42	first strand
Strand 2	W	48	51	anti-parallel
Strand 3	W	218	222	parallel
Strand 4	W	58	65	anti-parallel
Strand 5	W	119	126	anti-parallel
Strand 6	W	109	114	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	257	259	first strand
Strand 2	W	436	441	parallel
Strand 3	W	266	274	anti-parallel
Strand 4	W	334	343	anti-parallel
Strand 5	W	322	329	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	49	52	first strand
Strand 2	Y	58	63	anti-parallel
Strand 3	Y	229	235	parallel
Strand 4	Y	68	75	anti-parallel
Strand 5	Y	129	136	anti-parallel
Strand 6	Y	119	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CG3