Analysis of interatomic Contacts of Structural Units in PDB entry:
9CGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CGI entry

There are 5 chains in PDB entry 9CGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5VAL 1463
B
 MET 479PRO 579
C
 MET 479ASN 708
D
 MET 479LYS 595
E
 MET 479GLY 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 9CGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed alpha
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
60 77Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
91 96Right-handed alpha
Helix 6
AA6
A
104 137Right-handed alpha
Helix 7
AA7
A
140 155Right-handed alpha
Helix 8
AA8
A
156 163Right-handed alpha
Helix 9
AA9
A
166 188Right-handed alpha
Helix 10
AB1
A
189 193Right-handed 310
Helix 11
AB2
A
231 255Right-handed alpha
Helix 12
AB3
A
260 273Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
282 288Right-handed alpha
Helix 15
AB6
A
289 300Right-handed alpha
Helix 16
AB7
A
309 327Right-handed alpha
Helix 17
AB8
A
330 346Right-handed alpha
Helix 18
AB9
A
349 354Right-handed alpha
Helix 19
AC1
A
355 360Right-handed 310
Helix 20
AC2
A
369 382Right-handed alpha
Helix 21
AC3
A
389 411Right-handed alpha
Helix 22
AC4
A
425 435Right-handed alpha
Helix 23
AC5
A
439 446Right-handed alpha
Helix 24
AC6
A
447 451Right-handed 310
Helix 25
AC7
A
479 487Right-handed 310
Helix 26
AC8
A
488 492Right-handed 310
Helix 27
AC9
A
505 512Right-handed alpha
Helix 28
AD1
A
516 526Right-handed alpha
Helix 29
AD2
A
557 574Right-handed alpha
Helix 30
AD3
A
577 581Right-handed 310
Helix 31
AD4
A
587 598Right-handed alpha
Helix 32
AD5
A
725 729Right-handed 310
Helix 33
AD6
A
731 747Right-handed alpha
Helix 34
AD7
A
753 760Right-handed alpha
Helix 35
AD8
A
780 784Right-handed 310
Helix 36
AD9
A
802 821Right-handed alpha
Helix 37
AE1
A
847 874Right-handed alpha
Helix 38
AE2
A
904 910Right-handed alpha
Helix 39
AE3
A
922 940Right-handed alpha
Helix 40
AE4
A
943 964Right-handed alpha
Helix 41
AE5
A
972 981Right-handed alpha
Helix 42
AE6
A
982 992Right-handed alpha
Helix 43
AE7
A
993 997Right-handed 310
Helix 44
AE8
A
1014 1029Right-handed alpha
Helix 45
AE9
A
1033 1041Right-handed alpha
Helix 46
AF1
A
1049 1056Right-handed alpha
Helix 47
AF2
A
1067 1083Right-handed alpha
Helix 48
AF3
A
1096 1110Right-handed alpha
Helix 49
AF4
A
1115 1126Right-handed alpha
Helix 50
AF5
A
1126 1138Right-handed alpha
Helix 51
AF6
A
1141 1153Right-handed alpha
Helix 52
AF7
A
1156 1164Right-handed alpha
Helix 53
AF8
A
1164 1178Right-handed alpha
Helix 54
AF9
A
1191 1204Right-handed alpha
Helix 55
AG1
A
1204 1209Right-handed alpha
Helix 56
AG2
A
1220 1224Right-handed alpha
Helix 57
AG3
A
1236 1241Right-handed alpha
Helix 58
AG4
A
1291 1309Right-handed alpha
Helix 59
AG5
A
1311 1323Right-handed alpha
Helix 60
AG6
A
1329 1337Right-handed alpha
Helix 61
AG7
A
1391 1407Right-handed alpha
Helix 62
AG8
B
480 484Right-handed alpha
Helix 63
AG9
B
489 501Right-handed alpha
Helix 64
AH1
B
502 506Right-handed 310
Helix 65
AH2
B
507 541Right-handed alpha
Helix 66
AH3
B
542 574Right-handed alpha
Helix 67
AH4
C
480 485Right-handed alpha
Helix 68
AH5
C
489 501Right-handed alpha
Helix 69
AH6
C
502 506Right-handed 310
Helix 70
AH7
C
507 533Right-handed alpha
Helix 71
AH8
C
533 541Right-handed alpha
Helix 72
AH9
C
542 574Right-handed alpha
Helix 73
AI1
C
602 608Right-handed 310
Helix 74
AI2
C
634 638Right-handed 310
Helix 75
AI3
C
657 672Right-handed alpha
Helix 76
AI4
C
674 688Right-handed alpha
Helix 77
AI5
C
690 708Right-handed alpha
Helix 78
AI6
D
480 484Right-handed alpha
Helix 79
AI7
D
489 501Right-handed alpha
Helix 80
AI8
D
502 506Right-handed 310
Helix 81
AI9
D
507 541Right-handed alpha
Helix 82
AJ1
D
542 578Right-handed alpha
Helix 83
AJ2
E
480 484Right-handed alpha
Helix 84
AJ3
E
489 501Right-handed alpha
Helix 85
AJ4
E
502 506Right-handed 310
Helix 86
AJ5
E
507 541Right-handed alpha
Helix 87
AJ6
E
542 573Right-handed alpha
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There are 11 sheets in PDB entry 9CGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
367 368parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
224 230parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
199 202anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
E
575 578anti-parallel
Strand 3
C
594 599parallel
Strand 4
C
575 577anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
454 455anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
503 504anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 556first strand
Strand 2
A
537 542anti-parallel
Strand 3
A
763 766parallel
Strand 4
A
790 792anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 830first strand
Strand 2
A
833 842anti-parallel
Strand 3
A
713 721anti-parallel
Strand 4
A
883 885anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 891first strand
Strand 2
A
894 897anti-parallel
Strand 3
A
900 901anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1114first strand
Strand 2
A
1212 1213parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1231first strand
Strand 2
A
1418 1424anti-parallel
Strand 3
A
1246 1251anti-parallel
Strand 4
A
1371 1373anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1380 1381first strand
Strand 2
A
1384 1385anti-parallel
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