Analysis of interatomic Contacts of Structural Units in PDB entry:
9CGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CGO entry

There are 2 chains in PDB entry 9CGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1549ALA 1820
B
 THR 1540ALA 1820
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9CGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1549 1561Right-handed alpha
Helix 2
AA2
A
1563 1576Right-handed alpha
Helix 3
AA3
A
1617 1620Right-handed 310
Helix 4
AA4
A
1621 1630Right-handed alpha
Helix 5
AA5
A
1654 1671Right-handed alpha
Helix 6
AA6
A
1681 1697Right-handed alpha
Helix 7
AA7
A
1716 1721Right-handed alpha
Helix 8
AA8
A
1721 1733Right-handed alpha
Helix 9
AA9
A
1738 1754Right-handed alpha
Helix 10
AB1
A
1801 1805Right-handed 310
Helix 11
AB2
A
1807 1820Right-handed alpha
Helix 12
AB3
B
1550 1561Right-handed alpha
Helix 13
AB4
B
1563 1575Right-handed alpha
Helix 14
AB5
B
1576 1578Right-handed 310
Helix 15
AB6
B
1617 1620Right-handed 310
Helix 16
AB7
B
1621 1630Right-handed alpha
Helix 17
AB8
B
1654 1671Right-handed alpha
Helix 18
AB9
B
1681 1697Right-handed alpha
Helix 19
AC1
B
1716 1721Right-handed alpha
Helix 20
AC2
B
1721 1733Right-handed alpha
Helix 21
AC3
B
1738 1752Right-handed alpha
Helix 22
AC4
B
1801 1805Right-handed 310
Helix 23
AC5
B
1807 1819Right-handed alpha
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There are 4 sheets in PDB entry 9CGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1580 1581first strand
Strand 2
A
1651 1652parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1592 1595first strand
Strand 2
A
1637 1640anti-parallel
Strand 3
A
1605 1609parallel
Strand 4
A
1675 1680parallel
Strand 5
A
1703 1707parallel
Strand 6
A
1764 1769parallel
Strand 7
A
1792 1796parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1580 1581first strand
Strand 2
B
1651 1652parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1637 1640first strand
Strand 2
B
1605 1609parallel
Strand 3
B
1675 1680parallel
Strand 4
B
1704 1707parallel
Strand 5
B
1764 1769parallel
Strand 6
B
1792 1796parallel
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