Analysis of interatomic Contacts of Structural Units in PDB entry:
9CGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CGU entry

There are 4 chains in PDB entry 9CGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 U 7 U 98
C
 C 1 A 32
D
 T 9 G 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9CGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
59 94Right-handed alpha
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
121 132Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
179 183Right-handed 310
Helix 8
AA8
A
184 196Right-handed alpha
Helix 9
AA9
A
206 217Right-handed alpha
Helix 10
AB1
A
220 229Right-handed alpha
Helix 11
AB2
A
233 239Right-handed alpha
Helix 12
AB3
A
239 246Right-handed alpha
Helix 13
AB4
A
268 281Right-handed alpha
Helix 14
AB5
A
289 306Right-handed alpha
Helix 15
AB6
A
315 343Right-handed alpha
Helix 16
AB7
A
346 352Right-handed alpha
Helix 17
AB8
A
368 381Right-handed alpha
Helix 18
AB9
A
389 395Right-handed alpha
Helix 19
AC1
A
411 427Right-handed alpha
Helix 20
AC2
A
436 446Right-handed alpha
Helix 21
AC3
A
477 482Right-handed alpha
Helix 22
AC4
A
483 494Right-handed alpha
Helix 23
AC5
A
512 527Right-handed alpha
Helix 24
AC6
A
543 552Right-handed alpha
Helix 25
AC7
A
563 572Right-handed alpha
Helix 26
AC8
A
591 601Right-handed alpha
Helix 27
AC9
A
604 609Right-handed alpha
Helix 28
AD1
A
612 626Right-handed alpha
Helix 29
AD2
A
628 637Right-handed alpha
Helix 30
AD3
A
638 640Right-handed 310
Helix 31
AD4
A
647 652Right-handed alpha
Helix 32
AD5
A
663 669Right-handed alpha
Helix 33
AD6
A
678 685Right-handed alpha
Helix 34
AD7
A
692 698Right-handed alpha
Helix 35
AD8
A
703 713Right-handed alpha
Helix 36
AD9
A
722 726Right-handed 310
Helix 37
AE1
A
732 751Right-handed alpha
Helix 38
AE2
A
926 940Right-handed alpha
Helix 39
AE3
A
959 971Right-handed alpha
Helix 40
AE4
A
980 1000Right-handed alpha
Helix 41
AE5
A
1079 1089Right-handed alpha
Helix 42
AE6
A
1170 1177Right-handed alpha
Helix 43
AE7
A
1177 1186Right-handed alpha
Helix 44
AE8
A
1191 1195Right-handed 310
Helix 45
AE9
A
1207 1209Right-handed 310
Helix 46
AF1
A
1229 1241Right-handed alpha
Helix 47
AF2
A
1250 1262Right-handed alpha
Helix 48
AF3
A
1263 1280Right-handed alpha
Helix 49
AF4
A
1283 1297Right-handed alpha
Helix 50
AF5
A
1303 1317Right-handed alpha
Helix 51
AF6
A
1338 1344Right-handed 310
Helix 52
AF7
A
1362 1366Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9CGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
1093 1096parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
43 46anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1202 1206anti-parallel
Strand 5
A
1210 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
578 580anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
954 957parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il