Analysis of interatomic Contacts of Structural Units in PDB entry:
9CGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CGY entry

There is 1 chain in PDB entry 9CGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27CYS 926
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9CGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 45Right-handed alpha
Helix 2
AA2
A
58 68Right-handed alpha
Helix 3
AA3
A
114 131Right-handed alpha
Helix 4
AA4
A
142 147Right-handed 310
Helix 5
AA5
A
148 170Right-handed alpha
Helix 6
AA6
A
183 187Right-handed 310
Helix 7
AA7
A
214 231Right-handed alpha
Helix 8
AA8
A
242 244Right-handed 310
Helix 9
AA9
A
245 259Right-handed alpha
Helix 10
AB1
A
291 294Right-handed 310
Helix 11
AB2
A
295 298Right-handed 310
Helix 12
AB3
A
299 313Right-handed alpha
Helix 13
AB4
A
348 363Right-handed alpha
Helix 14
AB5
A
376 383Right-handed alpha
Helix 15
AB6
A
474 483Right-handed alpha
Helix 16
AB7
A
522 531Right-handed alpha
Helix 17
AB8
A
544 549Right-handed alpha
Helix 18
AB9
A
557 571Right-handed alpha
Helix 19
AC1
A
616 631Right-handed alpha
Helix 20
AC2
A
650 660Right-handed alpha
Helix 21
AC3
A
678 682Right-handed 310
Helix 22
AC4
A
718 726Right-handed alpha
Helix 23
AC5
A
742 745Right-handed 310
Helix 24
AC6
A
746 763Right-handed alpha
Helix 25
AC7
A
769 783Right-handed alpha
Helix 26
AC8
A
808 811Right-handed 310
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There are 14 sheets in PDB entry 9CGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
49 52parallel
Strand 3
A
71 77parallel
Strand 4
A
135 139parallel
Strand 5
A
174 178parallel
Strand 6
A
193 196parallel
Strand 7
A
235 240parallel
Strand 8
A
262 266parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
108 109anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
209 212anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
784 788anti-parallel
Strand 3
A
793 796anti-parallel
Strand 4
A
841 842anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
284 289parallel
Strand 3
A
334 340parallel
Strand 4
A
366 370parallel
Strand 5
A
453 457parallel
Strand 6
A
442 450anti-parallel
Strand 7
A
432 439anti-parallel
Strand 8
A
397 401anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
423 425anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
468 471anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
803 806anti-parallel
Strand 3
A
830 835anti-parallel
Strand 4
A
821 827anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
499 507anti-parallel
Strand 3
A
735 740parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
638 642parallel
Strand 3
A
574 578parallel
Strand 4
A
539 543parallel
Strand 5
A
499 507parallel
Strand 6
A
766 767parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 689first strand
Strand 2
A
692 695anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
812 813first strand
Strand 2
A
844 845anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 857first strand
Strand 2
A
883 887anti-parallel
Strand 3
A
909 913anti-parallel
Strand 4
A
904 906anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
861 868first strand
Strand 2
A
871 877anti-parallel
Strand 3
A
918 925anti-parallel
Strand 4
A
893 896anti-parallel
Strand 5
A
899 902anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il