Analysis of interatomic Contacts of Structural Units in PDB entry:
9CHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CHV entry

There are 3 chains in PDB entry 9CHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 32GLU 461
B
 THR 13ASN 369
C
 GLY 1GLU 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9CHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 61Right-handed alpha
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
102 115Right-handed alpha
Helix 6
AA6
A
116 137Right-handed alpha
Helix 7
AA7
A
137 145Right-handed alpha
Helix 8
AA8
A
146 172Right-handed alpha
Helix 9
AA9
A
197 207Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
217 225Right-handed alpha
Helix 12
AB3
A
226 231Right-handed alpha
Helix 13
AB4
A
236 246Right-handed alpha
Helix 14
AB5
A
255 259Right-handed alpha
Helix 15
AB6
A
270 278Right-handed alpha
Helix 16
AB7
A
286 296Right-handed alpha
Helix 17
AB8
A
302 315Right-handed alpha
Helix 18
AB9
A
325 336Right-handed alpha
Helix 19
AC1
A
340 356Right-handed alpha
Helix 20
AC2
A
364 373Right-handed alpha
Helix 21
AC3
A
377 381Right-handed 310
Helix 22
AC4
A
390 394Right-handed 310
Helix 23
AC5
A
400 408Right-handed alpha
Helix 24
AC6
A
409 421Right-handed alpha
Helix 25
AC7
A
429 435Right-handed alpha
Helix 26
AC8
A
436 445Right-handed alpha
Helix 27
AC9
A
446 451Right-handed 310
Helix 28
AD1
A
452 461Right-handed alpha
Helix 29
AD2
B
42 50Right-handed alpha
Helix 30
AD3
B
56 73Right-handed alpha
Helix 31
AD4
B
93 104Right-handed alpha
Helix 32
AD5
B
124 139Right-handed alpha
Helix 33
AD6
B
153 159Right-handed alpha
Helix 34
AD7
B
161 169Right-handed alpha
Helix 35
AD8
B
170 182Right-handed alpha
Helix 36
AD9
B
207 213Right-handed 310
Helix 37
AE1
B
224 230Right-handed alpha
Helix 38
AE2
B
260 271Right-handed alpha
Helix 39
AE3
B
309 313Right-handed 310
Helix 40
AE4
B
347 369Right-handed alpha
Helix 41
AE5
C
56 63Right-handed alpha
Helix 42
AE6
C
64 66Right-handed 310
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There are 6 sheets in PDB entry 9CHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
284 285anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
112 113parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
194 196anti-parallel
Strand 3
B
276 278parallel
Strand 4
B
301 304parallel
Strand 5
B
287 288anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 324first strand
Strand 2
B
327 332anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 49first strand
Strand 2
C
21 25anti-parallel
Strand 3
C
102 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il