Analysis of interatomic Contacts of Structural Units in PDB entry:
9CIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CIP entry

There are 2 chains in PDB entry 9CIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 52	TRP 526
B	LYS 52	TRP 526

There are 34 helices in PDB entry 9CIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	83	Right-handed alpha
Helix 2	AA2	A	149	164	Right-handed alpha
Helix 3	AA3	A	209	217	Right-handed alpha
Helix 4	AA4	A	218	222	Right-handed 310
Helix 5	AA5	A	235	242	Right-handed alpha
Helix 6	AA6	A	267	275	Right-handed alpha
Helix 7	AA7	A	302	321	Right-handed alpha
Helix 8	AA8	A	335	353	Right-handed alpha
Helix 9	AA9	A	355	364	Right-handed alpha
Helix 10	AB1	A	379	386	Right-handed alpha
Helix 11	AB2	A	391	401	Right-handed alpha
Helix 12	AB3	A	405	422	Right-handed alpha
Helix 13	AB4	A	429	433	Right-handed 310
Helix 14	AB5	A	463	468	Right-handed 310
Helix 15	AB6	A	475	479	Right-handed 310
Helix 16	AB7	A	486	491	Right-handed alpha
Helix 17	AB8	A	502	512	Right-handed alpha
Helix 18	AB9	B	68	83	Right-handed alpha
Helix 19	AC1	B	149	164	Right-handed alpha
Helix 20	AC2	B	210	217	Right-handed alpha
Helix 21	AC3	B	218	222	Right-handed 310
Helix 22	AC4	B	235	242	Right-handed alpha
Helix 23	AC5	B	267	275	Right-handed alpha
Helix 24	AC6	B	302	321	Right-handed alpha
Helix 25	AC7	B	335	353	Right-handed alpha
Helix 26	AC8	B	355	364	Right-handed alpha
Helix 27	AC9	B	379	386	Right-handed alpha
Helix 28	AD1	B	391	401	Right-handed alpha
Helix 29	AD2	B	405	422	Right-handed alpha
Helix 30	AD3	B	429	433	Right-handed 310
Helix 31	AD4	B	464	468	Right-handed 310
Helix 32	AD5	B	474	479	Right-handed 310
Helix 33	AD6	B	486	491	Right-handed alpha
Helix 34	AD7	B	502	512	Right-handed alpha

There are 9 sheets in PDB entry 9CIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	115	121	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	56	63	parallel
Strand 5	A	168	174	parallel
Strand 6	A	223	229	parallel
Strand 7	A	251	256	parallel
Strand 8	A	328	332	anti-parallel
Strand 9	A	423	427	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	285	first strand
Strand 2	A	292	294	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	442	444	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	115	121	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	56	63	parallel
Strand 5	B	168	174	parallel
Strand 6	B	223	229	parallel
Strand 7	B	251	256	parallel
Strand 8	B	328	332	anti-parallel
Strand 9	B	423	427	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	206	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	285	first strand
Strand 2	B	292	294	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	442	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	461	462	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CIP