Analysis of interatomic Contacts of Structural Units in PDB entry:
9CIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CIS entry

There are 4 chains in PDB entry 9CIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 3	PHE 405
A	MET 3	PHE 405
C	MET 3	PHE 405
D	VAL 5	PHE 405

There are 74 helices in PDB entry 9CIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	16	30	Right-handed alpha
Helix 2	AA2	B	45	50	Right-handed 310
Helix 3	AA3	B	54	61	Right-handed alpha
Helix 4	AA4	B	66	70	Right-handed 310
Helix 5	AA5	B	72	76	Right-handed 310
Helix 6	AA6	B	101	114	Right-handed alpha
Helix 7	AA7	B	129	142	Right-handed alpha
Helix 8	AA8	B	166	189	Right-handed alpha
Helix 9	AA9	B	202	213	Right-handed alpha
Helix 10	AB1	B	230	240	Right-handed alpha
Helix 11	AB2	B	256	263	Right-handed alpha
Helix 12	AB3	B	289	300	Right-handed alpha
Helix 13	AB4	B	301	310	Right-handed alpha
Helix 14	AB5	B	323	327	Right-handed 310
Helix 15	AB6	B	332	353	Right-handed alpha
Helix 16	AB7	B	372	375	Right-handed 310
Helix 17	AB8	B	384	397	Right-handed alpha
Helix 18	AB9	B	398	401	Right-handed 310
Helix 19	AC1	A	16	30	Right-handed alpha
Helix 20	AC2	A	45	50	Right-handed 310
Helix 21	AC3	A	54	61	Right-handed alpha
Helix 22	AC4	A	66	70	Right-handed 310
Helix 23	AC5	A	104	114	Right-handed alpha
Helix 24	AC6	A	115	120	Right-handed alpha
Helix 25	AC7	A	131	142	Right-handed alpha
Helix 26	AC8	A	166	188	Right-handed alpha
Helix 27	AC9	A	202	213	Right-handed alpha
Helix 28	AD1	A	225	230	Right-handed alpha
Helix 29	AD2	A	230	240	Right-handed alpha
Helix 30	AD3	A	256	264	Right-handed alpha
Helix 31	AD4	A	285	288	Right-handed 310
Helix 32	AD5	A	289	300	Right-handed alpha
Helix 33	AD6	A	301	311	Right-handed alpha
Helix 34	AD7	A	323	327	Right-handed 310
Helix 35	AD8	A	332	352	Right-handed alpha
Helix 36	AD9	A	371	376	Right-handed alpha
Helix 37	AE1	A	384	400	Right-handed alpha
Helix 38	AE2	C	16	30	Right-handed alpha
Helix 39	AE3	C	45	50	Right-handed 310
Helix 40	AE4	C	54	61	Right-handed alpha
Helix 41	AE5	C	66	70	Right-handed 310
Helix 42	AE6	C	72	76	Right-handed 310
Helix 43	AE7	C	103	120	Right-handed alpha
Helix 44	AE8	C	129	142	Right-handed alpha
Helix 45	AE9	C	166	189	Right-handed alpha
Helix 46	AF1	C	202	212	Right-handed alpha
Helix 47	AF2	C	225	230	Right-handed alpha
Helix 48	AF3	C	230	239	Right-handed alpha
Helix 49	AF4	C	256	264	Right-handed alpha
Helix 50	AF5	C	285	288	Right-handed 310
Helix 51	AF6	C	289	301	Right-handed alpha
Helix 52	AF7	C	301	311	Right-handed alpha
Helix 53	AF8	C	323	327	Right-handed 310
Helix 54	AF9	C	332	352	Right-handed alpha
Helix 55	AG1	C	384	401	Right-handed alpha
Helix 56	AG2	D	16	30	Right-handed alpha
Helix 57	AG3	D	46	50	Right-handed 310
Helix 58	AG4	D	54	61	Right-handed alpha
Helix 59	AG5	D	66	70	Right-handed 310
Helix 60	AG6	D	72	76	Right-handed 310
Helix 61	AG7	D	106	120	Right-handed alpha
Helix 62	AG8	D	129	139	Right-handed alpha
Helix 63	AG9	D	166	189	Right-handed alpha
Helix 64	AH1	D	202	213	Right-handed alpha
Helix 65	AH2	D	225	230	Right-handed alpha
Helix 66	AH3	D	230	240	Right-handed alpha
Helix 67	AH4	D	256	261	Right-handed alpha
Helix 68	AH5	D	285	288	Right-handed 310
Helix 69	AH6	D	289	299	Right-handed alpha
Helix 70	AH7	D	301	311	Right-handed alpha
Helix 71	AH8	D	323	327	Right-handed 310
Helix 72	AH9	D	332	352	Right-handed alpha
Helix 73	AI1	D	371	375	Right-handed alpha
Helix 74	AI2	D	384	400	Right-handed alpha

There are 12 sheets in PDB entry 9CIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	4	10	parallel
Strand 4	B	123	128	parallel
Strand 5	B	146	151	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	245	250	parallel
Strand 3	B	190	196	parallel
Strand 4	B	316	321	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	362	first strand
Strand 2	B	365	370	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	4	9	parallel
Strand 4	A	123	128	parallel
Strand 5	A	146	151	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	245	250	parallel
Strand 3	A	191	196	parallel
Strand 4	A	317	321	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	362	first strand
Strand 2	A	365	370	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	37	41	anti-parallel
Strand 3	C	4	9	parallel
Strand 4	C	123	128	parallel
Strand 5	C	147	151	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	245	250	parallel
Strand 3	C	190	196	parallel
Strand 4	C	316	321	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	362	first strand
Strand 2	C	365	370	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	6	9	parallel
Strand 4	D	124	128	parallel
Strand 5	D	147	151	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	245	250	parallel
Strand 3	D	191	196	parallel
Strand 4	D	317	321	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	362	first strand
Strand 2	D	365	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CIS