Analysis of interatomic Contacts of Structural Units in PDB entry:
9CJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CJ8 entry

There are 8 chains in PDB entry 9CJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	UNK 1	UNK 109
L	UNK 2	UNK 103
C	SER 60	LEU 259
A	SER 60	LEU 259
B	SER 60	LEU 259
a	GLY 260	MET 414
b	GLY 260	MET 414
c	GLY 260	MET 414

There are 39 helices in PDB entry 9CJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	75	79	Right-handed 310
Helix 2	AA2	C	119	127	Right-handed alpha
Helix 3	AA3	C	130	143	Right-handed alpha
Helix 4	AA4	C	149	151	Right-handed 310
Helix 5	AA5	C	182	195	Right-handed alpha
Helix 6	AA6	C	238	246	Right-handed alpha
Helix 7	AA7	A	75	80	Right-handed 310
Helix 8	AA8	A	119	127	Right-handed alpha
Helix 9	AA9	A	130	143	Right-handed alpha
Helix 10	AB1	A	149	151	Right-handed 310
Helix 11	AB2	A	182	192	Right-handed alpha
Helix 12	AB3	A	238	245	Right-handed alpha
Helix 13	AB4	A	246	250	Right-handed 310
Helix 14	AB5	B	74	79	Right-handed 310
Helix 15	AB6	B	119	127	Right-handed alpha
Helix 16	AB7	B	130	143	Right-handed alpha
Helix 17	AB8	B	157	161	Right-handed 310
Helix 18	AB9	B	182	195	Right-handed alpha
Helix 19	AC1	B	238	245	Right-handed alpha
Helix 20	AC2	a	294	299	Right-handed alpha
Helix 21	AC3	a	300	303	Right-handed 310
Helix 22	AC4	a	308	326	Right-handed alpha
Helix 23	AC5	a	334	345	Right-handed alpha
Helix 24	AC6	a	346	359	Right-handed alpha
Helix 25	AC7	a	399	414	Right-handed alpha
Helix 26	AC8	b	281	285	Right-handed 310
Helix 27	AC9	b	294	299	Right-handed alpha
Helix 28	AD1	b	299	304	Right-handed alpha
Helix 29	AD2	b	307	324	Right-handed alpha
Helix 30	AD3	b	334	340	Right-handed alpha
Helix 31	AD4	b	340	345	Right-handed alpha
Helix 32	AD5	b	346	360	Right-handed alpha
Helix 33	AD6	b	399	411	Right-handed alpha
Helix 34	AD7	c	294	300	Right-handed alpha
Helix 35	AD8	c	301	303	Right-handed 310
Helix 36	AD9	c	307	325	Right-handed alpha
Helix 37	AE1	c	334	345	Right-handed alpha
Helix 38	AE2	c	346	359	Right-handed alpha
Helix 39	AE3	c	399	414	Right-handed alpha

There are 17 sheets in PDB entry 9CJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	58	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	90	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	70	first strand
Strand 2	H	77	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	24	25	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	65	first strand
Strand 2	L	72	75	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	66	67	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	c	368	371	anti-parallel
Strand 3	c	384	385	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	93	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	222	anti-parallel
Strand 5	C	164	167	anti-parallel
Strand 6	C	153	154	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	93	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	224	226	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	161	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	a	372	374	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	a	363	370	anti-parallel
Strand 3	a	384	389	anti-parallel
Strand 4	a	392	393	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	155	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	b	368	373	anti-parallel
Strand 3	b	384	385	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	95	96	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	154	156	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CJ8