Analysis of interatomic Contacts of Structural Units in PDB entry:
9CJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CJG entry

There are 2 chains in PDB entry 9CJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4GLY 391
B
 ALA 8GLY 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9CJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed alpha
Helix 2
AA2
A
13 23Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
85 96Right-handed alpha
Helix 7
AA7
A
99 120Right-handed alpha
Helix 8
AA8
A
129 133Right-handed alpha
Helix 9
AA9
A
135 147Right-handed alpha
Helix 10
AB1
A
149 151Right-handed 310
Helix 11
AB2
A
152 165Right-handed alpha
Helix 12
AB3
A
173 196Right-handed alpha
Helix 13
AB4
A
200 208Right-handed alpha
Helix 14
AB5
A
216 232Right-handed alpha
Helix 15
AB6
A
232 249Right-handed alpha
Helix 16
AB7
A
249 259Right-handed alpha
Helix 17
AB8
A
262 275Right-handed alpha
Helix 18
AB9
A
305 311Right-handed alpha
Helix 19
AC1
A
343 362Right-handed alpha
Helix 20
AC2
A
368 372Right-handed 310
Helix 21
AC3
B
15 21Right-handed alpha
Helix 22
AC4
B
42 52Right-handed alpha
Helix 23
AC5
B
58 62Right-handed 310
Helix 24
AC6
B
78 82Right-handed 310
Helix 25
AC7
B
85 98Right-handed alpha
Helix 26
AC8
B
99 120Right-handed alpha
Helix 27
AC9
B
129 133Right-handed alpha
Helix 28
AD1
B
135 147Right-handed alpha
Helix 29
AD2
B
149 151Right-handed 310
Helix 30
AD3
B
152 165Right-handed alpha
Helix 31
AD4
B
173 196Right-handed alpha
Helix 32
AD5
B
200 208Right-handed alpha
Helix 33
AD6
B
216 232Right-handed alpha
Helix 34
AD7
B
232 249Right-handed alpha
Helix 35
AD8
B
249 259Right-handed alpha
Helix 36
AD9
B
262 275Right-handed alpha
Helix 37
AE1
B
305 310Right-handed alpha
Helix 38
AE2
B
343 362Right-handed alpha
Helix 39
AE3
B
368 372Right-handed 310
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There are 9 sheets in PDB entry 9CJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
302 304parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
284 285anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
363 365anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
294 296anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
36 40anti-parallel
Strand 3
B
302 304parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
284 285anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
387 390anti-parallel
Strand 3
B
363 365anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
213 214anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
294 296anti-parallel
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