Analysis of interatomic Contacts of Structural Units in PDB entry:
9CJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CJH entry

There are 2 chains in PDB entry 9CJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 4 A 28
A
 THR 2VAL 1241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9CJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 45Right-handed alpha
Helix 4
AA4
A
49 68Right-handed alpha
Helix 5
AA5
A
73 86Right-handed alpha
Helix 6
AA6
A
88 112Right-handed alpha
Helix 7
AA7
A
118 131Right-handed alpha
Helix 8
AA8
A
132 133Right-handed 310
Helix 9
AA9
A
134 138Right-handed 310
Helix 10
AB1
A
140 146Right-handed alpha
Helix 11
AB2
A
152 160Right-handed alpha
Helix 12
AB3
A
161 163Right-handed 310
Helix 13
AB4
A
165 168Right-handed 310
Helix 14
AB5
A
169 181Right-handed alpha
Helix 15
AB6
A
188 196Right-handed alpha
Helix 16
AB7
A
196 215Right-handed alpha
Helix 17
AB8
A
216 230Right-handed alpha
Helix 18
AB9
A
242 249Right-handed 310
Helix 19
AC1
A
251 264Right-handed alpha
Helix 20
AC2
A
325 344Right-handed alpha
Helix 21
AC3
A
344 356Right-handed alpha
Helix 22
AC4
A
360 363Right-handed 310
Helix 23
AC5
A
367 379Right-handed alpha
Helix 24
AC6
A
382 395Right-handed alpha
Helix 25
AC7
A
402 415Right-handed alpha
Helix 26
AC8
A
420 428Right-handed alpha
Helix 27
AC9
A
428 451Right-handed alpha
Helix 28
AD1
A
460 482Right-handed alpha
Helix 29
AD2
A
493 507Right-handed alpha
Helix 30
AD3
A
508 523Right-handed alpha
Helix 31
AD4
A
548 553Right-handed alpha
Helix 32
AD5
A
600 609Right-handed alpha
Helix 33
AD6
A
612 622Right-handed alpha
Helix 34
AD7
A
639 647Right-handed alpha
Helix 35
AD8
A
657 662Right-handed alpha
Helix 36
AD9
A
665 687Right-handed alpha
Helix 37
AE1
A
694 698Right-handed 310
Helix 38
AE2
A
706 719Right-handed alpha
Helix 39
AE3
A
728 737Right-handed alpha
Helix 40
AE4
A
759 769Right-handed alpha
Helix 41
AE5
A
770 776Right-handed alpha
Helix 42
AE6
A
819 831Right-handed alpha
Helix 43
AE7
A
839 846Right-handed alpha
Helix 44
AE8
A
847 849Right-handed 310
Helix 45
AE9
A
861 865Right-handed 310
Helix 46
AF1
A
887 899Right-handed alpha
Helix 47
AF2
A
943 955Right-handed alpha
Helix 48
AF3
A
958 987Right-handed alpha
Helix 49
AF4
A
1011 1025Right-handed alpha
Helix 50
AF5
A
1090 1101Right-handed alpha
Helix 51
AF6
A
1177 1190Right-handed alpha
Helix 52
AF7
A
1199 1207Right-handed alpha
Helix 53
AF8
A
1208 1224Right-handed alpha
Helix 54
AF9
A
1250 1254Right-handed 310
Helix 55
AG1
A
1261 1284Right-handed alpha
Helix 56
AG2
A
1294 1307Right-handed alpha
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There are 12 sheets in PDB entry 9CJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 596first strand
Strand 2
A
720 727anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
858 859anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
851 853anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 994parallel
Strand 5
A
1062 1066parallel
Strand 6
A
1058 1059anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1107first strand
Strand 2
A
1112 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1161first strand
Strand 2
A
1174 1176anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il