Analysis of interatomic Contacts of Structural Units in PDB entry:
9CJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CJN entry

There is 1 chain in PDB entry 9CJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9CJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
70 94Right-handed alpha
Helix 5
AA5
A
98 101Right-handed 310
Helix 6
AA6
A
102 107Right-handed alpha
Helix 7
AA7
A
110 122Right-handed alpha
Helix 8
AA8
A
130 134Right-handed 310
Helix 9
AA9
A
172 186Right-handed alpha
Helix 10
AB1
A
200 210Right-handed alpha
Helix 11
AB2
A
228 242Right-handed alpha
Helix 12
AB3
A
249 251Right-handed 310
Helix 13
AB4
A
261 263Right-handed 310
Helix 14
AB5
A
273 277Right-handed 310
Helix 15
AB6
A
278 282Right-handed 310
Helix 16
AB7
A
301 307Right-handed alpha
Helix 17
AB8
A
309 318Right-handed alpha
Helix 18
AB9
A
323 329Right-handed alpha
Helix 19
AC1
A
333 349Right-handed alpha
Helix 20
AC2
A
353 364Right-handed alpha
Helix 21
AC3
A
372 385Right-handed alpha
Helix 22
AC4
A
386 390Right-handed 310
Helix 23
AC5
A
409 411Right-handed 310
Helix 24
AC6
A
412 422Right-handed alpha
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There are 7 sheets in PDB entry 9CJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
67 68anti-parallel
Strand 4
A
497 500parallel
Strand 5
A
195 197anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 165first strand
Strand 2
A
137 148anti-parallel
Strand 3
A
463 468anti-parallel
Strand 4
A
471 475anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
219 222parallel
Strand 3
A
296 299parallel
Strand 4
A
320 321parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
265 270anti-parallel
Strand 3
A
288 292anti-parallel
Strand 4
A
283 285anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
434 439anti-parallel
Strand 3
A
392 397anti-parallel
Strand 4
A
406 407anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
456 459anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
494 495anti-parallel
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