Analysis of interatomic Contacts of Structural Units in PDB entry:
9CK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CK0 entry

There are 2 chains in PDB entry 9CK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 208TYR 477
B
 PRO 287ALA 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9CK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
251 259Right-handed alpha
Helix 4
AA4
A
260 262Right-handed 310
Helix 5
AA5
A
269 273Right-handed 310
Helix 6
AA6
A
276 303Right-handed alpha
Helix 7
AA7
A
305 309Right-handed 310
Helix 8
AA8
A
310 333Right-handed alpha
Helix 9
AA9
A
350 355Right-handed alpha
Helix 10
AB1
A
359 363Right-handed 310
Helix 11
AB2
A
364 377Right-handed alpha
Helix 12
AB3
A
380 393Right-handed alpha
Helix 13
AB4
A
403 425Right-handed alpha
Helix 14
AB5
A
430 460Right-handed alpha
Helix 15
AB6
A
466 474Right-handed alpha
Helix 16
AB7
B
288 296Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9CK0.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il