Analysis of interatomic Contacts of Structural Units in PDB entry:
9CKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CKP entry

There is 1 chain in PDB entry 9CKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9CKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
29 34Right-handed alpha
Helix 4
AA4
A
38 41Right-handed 310
Helix 5
AA5
A
42 49Right-handed alpha
Helix 6
AA6
A
52 58Right-handed alpha
Helix 7
AA7
A
60 72Right-handed alpha
Helix 8
AA8
A
74 91Right-handed alpha
Helix 9
AA9
A
97 110Right-handed alpha
Helix 10
AB1
A
122 136Right-handed alpha
Helix 11
AB2
A
142 154Right-handed alpha
Helix 12
AB3
A
155 164Right-handed alpha
Helix 13
AB4
A
164 178Right-handed alpha
Helix 14
AB5
A
182 184Right-handed 310
Helix 15
AB6
A
219 225Right-handed alpha
Helix 16
AB7
A
227 241Right-handed alpha
Helix 17
AB8
A
271 277Right-handed alpha
Helix 18
AB9
A
284 305Right-handed alpha
Helix 19
AC1
A
313 315Right-handed 310
Helix 20
AC2
A
329 333Right-handed 310
Helix 21
AC3
A
353 358Right-handed alpha
Helix 22
AC4
A
364 381Right-handed alpha
Helix 23
AC5
A
393 403Right-handed alpha
Helix 24
AC6
A
413 424Right-handed alpha
Helix 25
AC7
A
427 431Right-handed 310
Helix 26
AC8
A
439 444Right-handed alpha
Helix 27
AC9
A
445 449Right-handed 310
Helix 28
AD1
A
452 459Right-handed alpha
Helix 29
AD2
A
476 480Right-handed 310
Helix 30
AD3
A
492 494Right-handed 310
Helix 31
AD4
A
495 503Right-handed alpha
Helix 32
AD5
A
507 518Right-handed alpha
Helix 33
AD6
A
519 525Right-handed alpha
Helix 34
AD7
A
528 532Right-handed 310
Helix 35
AD8
A
534 538Right-handed 310
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There are 3 sheets in PDB entry 9CKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 195first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
211 218anti-parallel
Strand 4
A
258 263anti-parallel
Strand 5
A
249 254anti-parallel
Strand 6
A
505 506anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
317 319anti-parallel
Strand 3
A
325 327anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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