Analysis of interatomic Contacts of Structural Units in PDB entry:
9CKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CKX entry

There are 2 chains in PDB entry 9CKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 222
B
 GLY 1PHE 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9CKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
13 26Right-handed alpha
Helix 3
AA3
A
26 36Right-handed alpha
Helix 4
AA4
A
44 50Right-handed alpha
Helix 5
AA5
A
50 61Right-handed alpha
Helix 6
AA6
A
62 76Right-handed alpha
Helix 7
AA7
A
86 100Right-handed alpha
Helix 8
AA8
A
109 121Right-handed alpha
Helix 9
AA9
A
136 147Right-handed alpha
Helix 10
AB1
A
160 162Right-handed 310
Helix 11
AB2
A
163 169Right-handed alpha
Helix 12
AB3
A
183 195Right-handed alpha
Helix 13
AB4
A
197 222Right-handed alpha
Helix 14
AB5
B
4 13Right-handed alpha
Helix 15
AB6
B
13 26Right-handed alpha
Helix 16
AB7
B
26 37Right-handed alpha
Helix 17
AB8
B
44 50Right-handed alpha
Helix 18
AB9
B
50 61Right-handed alpha
Helix 19
AC1
B
62 76Right-handed alpha
Helix 20
AC2
B
86 101Right-handed alpha
Helix 21
AC3
B
109 121Right-handed alpha
Helix 22
AC4
B
136 147Right-handed alpha
Helix 23
AC5
B
160 162Right-handed 310
Helix 24
AC6
B
163 170Right-handed alpha
Helix 25
AC7
B
183 195Right-handed alpha
Helix 26
AC8
B
197 222Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9CKX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
79 83parallel
Strand 3
A
124 128parallel
Strand 4
A
155 159parallel
Strand 5
A
176 179parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
79 83parallel
Strand 3
B
124 128parallel
Strand 4
B
155 159parallel
Strand 5
B
176 179parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il