Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CLI entry

There are 12 chains in PDB entry 9CLI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	ALA 2	THR 951
K	SER 5	THR 951
L	ALA 2	ALA 950
Z	ALA 1	LEU 5
Z	MET 8	LEU 13
Z	ARG 15	ARG 15
Z	CYS 17	MET 18
Z	THR 21	TYR 24
Z	ALA 27	ARG 28
Z	VAL 30	PHE 31
Z	ASP 33	ASN 38
Z	PHE 40	GLY 430

There are 80 helices in PDB entry 9CLI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	3	6	Right-handed 310
Helix 2	AA2	J	7	13	Right-handed alpha
Helix 3	AA3	J	19	24	Right-handed alpha
Helix 4	AA4	J	25	35	Right-handed alpha
Helix 5	AA5	J	311	317	Right-handed 310
Helix 6	AA6	J	331	334	Right-handed 310
Helix 7	AA7	J	366	378	Right-handed alpha
Helix 8	AA8	J	395	400	Right-handed alpha
Helix 9	AA9	J	464	477	Right-handed alpha
Helix 10	AB1	J	478	481	Right-handed 310
Helix 11	AB2	J	500	507	Right-handed alpha
Helix 12	AB3	J	510	514	Right-handed 310
Helix 13	AB4	J	526	530	Right-handed 310
Helix 14	AB5	J	540	551	Right-handed alpha
Helix 15	AB6	J	623	634	Right-handed alpha
Helix 16	AB7	J	686	688	Right-handed 310
Helix 17	AB8	J	705	710	Right-handed alpha
Helix 18	AB9	J	714	716	Right-handed 310
Helix 19	AC1	J	764	775	Right-handed alpha
Helix 20	AC2	J	785	789	Right-handed 310
Helix 21	AC3	J	794	798	Right-handed 310
Helix 22	AC4	J	851	855	Right-handed 310
Helix 23	AC5	J	887	891	Right-handed 310
Helix 24	AC6	K	8	13	Right-handed alpha
Helix 25	AC7	K	25	35	Right-handed alpha
Helix 26	AC8	K	41	45	Right-handed 310
Helix 27	AC9	K	97	99	Right-handed 310
Helix 28	AD1	K	271	275	Right-handed 310
Helix 29	AD2	K	312	317	Right-handed 310
Helix 30	AD3	K	330	334	Right-handed 310
Helix 31	AD4	K	366	378	Right-handed alpha
Helix 32	AD5	K	395	400	Right-handed alpha
Helix 33	AD6	K	463	477	Right-handed alpha
Helix 34	AD7	K	478	481	Right-handed 310
Helix 35	AD8	K	482	486	Right-handed 310
Helix 36	AD9	K	500	507	Right-handed alpha
Helix 37	AE1	K	510	514	Right-handed 310
Helix 38	AE2	K	526	530	Right-handed 310
Helix 39	AE3	K	540	551	Right-handed alpha
Helix 40	AE4	K	623	634	Right-handed alpha
Helix 41	AE5	K	635	640	Right-handed 310
Helix 42	AE6	K	686	688	Right-handed 310
Helix 43	AE7	K	705	710	Right-handed alpha
Helix 44	AE8	K	714	716	Right-handed 310
Helix 45	AE9	K	763	775	Right-handed alpha
Helix 46	AF1	K	785	789	Right-handed 310
Helix 47	AF2	K	794	798	Right-handed 310
Helix 48	AF3	K	825	829	Right-handed 310
Helix 49	AF4	K	891	895	Right-handed 310
Helix 50	AF5	L	6	13	Right-handed alpha
Helix 51	AF6	L	19	23	Right-handed 310
Helix 52	AF7	L	25	35	Right-handed alpha
Helix 53	AF8	L	41	45	Right-handed 310
Helix 54	AF9	L	269	274	Right-handed alpha
Helix 55	AG1	L	312	317	Right-handed 310
Helix 56	AG2	L	330	334	Right-handed 310
Helix 57	AG3	L	366	378	Right-handed alpha
Helix 58	AG4	L	463	477	Right-handed alpha
Helix 59	AG5	L	482	486	Right-handed 310
Helix 60	AG6	L	500	507	Right-handed alpha
Helix 61	AG7	L	527	531	Right-handed 310
Helix 62	AG8	L	540	549	Right-handed alpha
Helix 63	AG9	L	588	593	Right-handed alpha
Helix 64	AH1	L	623	635	Right-handed alpha
Helix 65	AH2	L	686	688	Right-handed 310
Helix 66	AH3	L	705	710	Right-handed alpha
Helix 67	AH4	L	714	716	Right-handed 310
Helix 68	AH5	L	763	775	Right-handed alpha
Helix 69	AH6	L	785	789	Right-handed 310
Helix 70	AH7	L	794	798	Right-handed 310
Helix 71	AH8	L	818	822	Right-handed 310
Helix 72	AH9	L	851	855	Right-handed 310
Helix 73	AI1	L	886	896	Right-handed alpha
Helix 74	AI2	Z	48	53	Right-handed 310
Helix 75	AI3	Z	91	96	Right-handed 310
Helix 76	AI4	Z	236	241	Right-handed alpha
Helix 77	AI5	Z	305	312	Right-handed alpha
Helix 78	AI6	Z	313	316	Right-handed 310
Helix 79	AI7	Z	346	353	Right-handed alpha
Helix 80	AI8	Z	418	426	Right-handed alpha

There are 51 sheets in PDB entry 9CLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	607	618	anti-parallel
Strand 3	J	99	108	anti-parallel
Strand 4	J	555	562	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	74	first strand
Strand 2	J	79	88	anti-parallel
Strand 3	J	577	586	anti-parallel
Strand 4	J	347	350	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	573	574	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	137	first strand
Strand 2	J	165	172	anti-parallel
Strand 3	K	450	454	parallel
Strand 4	K	424	431	anti-parallel
Strand 5	J	263	268	anti-parallel
Strand 6	J	284	289	anti-parallel
Strand 7	J	219	224	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	137	first strand
Strand 2	J	165	172	anti-parallel
Strand 3	K	450	454	parallel
Strand 4	K	424	431	anti-parallel
Strand 5	K	439	440	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	180	first strand
Strand 2	J	183	189	anti-parallel
Strand 3	J	192	195	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	250	251	first strand
Strand 2	J	259	260	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	298	302	first strand
Strand 2	J	318	321	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	327	329	first strand
Strand 2	J	593	595	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	412	413	first strand
Strand 2	J	460	462	anti-parallel
Strand 3	L	415	416	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	415	416	first strand
Strand 2	K	460	462	anti-parallel
Strand 3	K	412	416	anti-parallel
Strand 4	L	460	461	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	439	441	first strand
Strand 2	J	424	431	anti-parallel
Strand 3	J	450	454	anti-parallel
Strand 4	L	165	172	parallel
Strand 5	L	133	137	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	439	441	first strand
Strand 2	J	424	431	anti-parallel
Strand 3	L	263	268	anti-parallel
Strand 4	L	284	289	anti-parallel
Strand 5	L	219	224	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	641	643	first strand
Strand 2	J	923	929	anti-parallel
Strand 3	J	937	943	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	649	656	first strand
Strand 2	J	914	921	anti-parallel
Strand 3	J	677	684	anti-parallel
Strand 4	J	871	874	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	662	670	first strand
Strand 2	J	899	907	anti-parallel
Strand 3	J	718	725	anti-parallel
Strand 4	J	729	730	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	662	670	first strand
Strand 2	J	899	907	anti-parallel
Strand 3	J	718	725	anti-parallel
Strand 4	J	743	744	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	799	806	first strand
Strand 2	J	858	865	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	607	618	anti-parallel
Strand 3	K	100	108	anti-parallel
Strand 4	K	555	562	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	79	88	anti-parallel
Strand 3	K	577	586	anti-parallel
Strand 4	K	347	350	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	95	first strand
Strand 2	K	573	574	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	L	450	454	parallel
Strand 4	L	424	431	anti-parallel
Strand 5	K	263	268	anti-parallel
Strand 6	K	284	289	anti-parallel
Strand 7	K	219	224	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	L	450	454	parallel
Strand 4	L	424	431	anti-parallel
Strand 5	L	439	441	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	179	180	first strand
Strand 2	K	183	189	anti-parallel
Strand 3	K	192	195	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	298	302	first strand
Strand 2	K	318	321	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	327	328	first strand
Strand 2	K	594	595	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	401	402	first strand
Strand 2	K	523	524	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	641	644	first strand
Strand 2	K	923	929	anti-parallel
Strand 3	K	937	943	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	649	656	first strand
Strand 2	K	914	921	anti-parallel
Strand 3	K	677	684	anti-parallel
Strand 4	K	871	874	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	662	670	first strand
Strand 2	K	899	907	anti-parallel
Strand 3	K	718	725	anti-parallel
Strand 4	K	729	730	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	662	670	first strand
Strand 2	K	899	907	anti-parallel
Strand 3	K	718	725	anti-parallel
Strand 4	K	743	744	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	755	756	first strand
Strand 2	K	761	762	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	799	806	first strand
Strand 2	K	858	865	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	607	619	anti-parallel
Strand 3	L	94	108	anti-parallel
Strand 4	L	555	562	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	79	88	anti-parallel
Strand 3	L	577	586	anti-parallel
Strand 4	L	347	350	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	179	180	first strand
Strand 2	L	183	184	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	187	189	first strand
Strand 2	L	192	194	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	252	first strand
Strand 2	L	258	259	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	298	302	first strand
Strand 2	L	318	321	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	401	402	first strand
Strand 2	L	523	524	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	641	644	first strand
Strand 2	L	923	929	anti-parallel
Strand 3	L	937	943	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	649	656	first strand
Strand 2	L	914	921	anti-parallel
Strand 3	L	677	684	anti-parallel
Strand 4	L	871	874	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	662	670	first strand
Strand 2	L	899	907	anti-parallel
Strand 3	L	718	725	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	755	756	first strand
Strand 2	L	761	762	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	799	806	first strand
Strand 2	L	858	865	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	60	63	first strand
Strand 2	Z	68	71	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	76	77	first strand
Strand 2	Z	83	84	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	99	103	first strand
Strand 2	Z	106	110	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	115	117	first strand
Strand 2	Z	124	126	anti-parallel

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There are 7 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	199	200	first strand
Strand 2	Z	338	343	anti-parallel
Strand 3	Z	318	323	anti-parallel
Strand 4	Z	382	387	anti-parallel
Strand 5	Z	390	399	anti-parallel
Strand 6	Z	410	414	anti-parallel
Strand 7	Z	362	365	anti-parallel

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There are 7 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	209	213	first strand
Strand 2	Z	219	225	anti-parallel
Strand 3	Z	230	233	anti-parallel
Strand 4	Z	284	288	anti-parallel
Strand 5	Z	261	270	anti-parallel
Strand 6	Z	245	248	anti-parallel
Strand 7	Z	209	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CLI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLI