Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CLN entry

There are 11 chains in PDB entry 9CLN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	ALA 2	THR 951
K	SER 5	THR 951
L	ALA 2	ALA 950
Z	ALA 1	LEU 5
Z	VAL 8	LEU 13
Z	ARG 15	ARG 15
Z	CYS 17	VAL 18
Z	THR 21	TYR 24
Z	ALA 27	PHE 28
Z	ALA 30	LEU 31
Z	SER 33	GLU 579

There are 94 helices in PDB entry 9CLN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	3	6	Right-handed 310
Helix 2	AA2	J	7	13	Right-handed alpha
Helix 3	AA3	J	19	24	Right-handed alpha
Helix 4	AA4	J	25	35	Right-handed alpha
Helix 5	AA5	J	269	274	Right-handed alpha
Helix 6	AA6	J	312	317	Right-handed 310
Helix 7	AA7	J	331	334	Right-handed 310
Helix 8	AA8	J	366	378	Right-handed alpha
Helix 9	AA9	J	395	400	Right-handed alpha
Helix 10	AB1	J	463	479	Right-handed alpha
Helix 11	AB2	J	480	481	Right-handed 310
Helix 12	AB3	J	482	486	Right-handed 310
Helix 13	AB4	J	500	507	Right-handed alpha
Helix 14	AB5	J	510	514	Right-handed 310
Helix 15	AB6	J	526	531	Right-handed alpha
Helix 16	AB7	J	540	551	Right-handed alpha
Helix 17	AB8	J	600	605	Right-handed alpha
Helix 18	AB9	J	623	634	Right-handed alpha
Helix 19	AC1	J	635	640	Right-handed 310
Helix 20	AC2	J	686	688	Right-handed 310
Helix 21	AC3	J	705	710	Right-handed alpha
Helix 22	AC4	J	713	716	Right-handed 310
Helix 23	AC5	J	762	775	Right-handed alpha
Helix 24	AC6	J	794	798	Right-handed 310
Helix 25	AC7	J	825	829	Right-handed 310
Helix 26	AC8	J	851	855	Right-handed 310
Helix 27	AC9	J	891	895	Right-handed 310
Helix 28	AD1	K	8	13	Right-handed alpha
Helix 29	AD2	K	25	35	Right-handed alpha
Helix 30	AD3	K	41	45	Right-handed 310
Helix 31	AD4	K	97	99	Right-handed 310
Helix 32	AD5	K	331	334	Right-handed 310
Helix 33	AD6	K	341	345	Right-handed 310
Helix 34	AD7	K	365	378	Right-handed alpha
Helix 35	AD8	K	395	400	Right-handed alpha
Helix 36	AD9	K	463	477	Right-handed alpha
Helix 37	AE1	K	478	481	Right-handed 310
Helix 38	AE2	K	482	486	Right-handed 310
Helix 39	AE3	K	500	506	Right-handed alpha
Helix 40	AE4	K	510	514	Right-handed 310
Helix 41	AE5	K	526	531	Right-handed alpha
Helix 42	AE6	K	540	550	Right-handed alpha
Helix 43	AE7	K	566	570	Right-handed 310
Helix 44	AE8	K	600	604	Right-handed 310
Helix 45	AE9	K	623	634	Right-handed alpha
Helix 46	AF1	K	635	640	Right-handed 310
Helix 47	AF2	K	686	688	Right-handed 310
Helix 48	AF3	K	705	710	Right-handed alpha
Helix 49	AF4	K	714	716	Right-handed 310
Helix 50	AF5	K	763	775	Right-handed alpha
Helix 51	AF6	K	794	796	Right-handed 310
Helix 52	AF7	K	818	822	Right-handed 310
Helix 53	AF8	K	891	895	Right-handed 310
Helix 54	AF9	L	3	5	Right-handed 310
Helix 55	AG1	L	6	13	Right-handed alpha
Helix 56	AG2	L	25	35	Right-handed alpha
Helix 57	AG3	L	95	97	Right-handed 310
Helix 58	AG4	L	270	274	Right-handed 310
Helix 59	AG5	L	311	317	Right-handed 310
Helix 60	AG6	L	331	334	Right-handed 310
Helix 61	AG7	L	341	345	Right-handed 310
Helix 62	AG8	L	365	377	Right-handed alpha
Helix 63	AG9	L	463	477	Right-handed alpha
Helix 64	AH1	L	500	507	Right-handed alpha
Helix 65	AH2	L	540	551	Right-handed alpha
Helix 66	AH3	L	566	570	Right-handed 310
Helix 67	AH4	L	588	592	Right-handed alpha
Helix 68	AH5	L	600	605	Right-handed alpha
Helix 69	AH6	L	623	636	Right-handed alpha
Helix 70	AH7	L	637	640	Right-handed 310
Helix 71	AH8	L	763	775	Right-handed alpha
Helix 72	AH9	L	794	798	Right-handed 310
Helix 73	AI1	L	818	822	Right-handed 310
Helix 74	AI2	L	886	896	Right-handed alpha
Helix 75	AI3	Z	3	8	Right-handed 310
Helix 76	AI4	Z	12	17	Right-handed alpha
Helix 77	AI5	Z	23	30	Right-handed alpha
Helix 78	AI6	Z	33	47	Right-handed alpha
Helix 79	AI7	Z	48	51	Right-handed 310
Helix 80	AI8	Z	53	63	Right-handed alpha
Helix 81	AI9	Z	104	108	Right-handed 310
Helix 82	AJ1	Z	172	176	Right-handed 310
Helix 83	AJ2	Z	196	206	Right-handed alpha
Helix 84	AJ3	Z	251	255	Right-handed 310
Helix 85	AJ4	Z	282	287	Right-handed alpha
Helix 86	AJ5	Z	309	313	Right-handed 310
Helix 87	AJ6	Z	316	320	Right-handed 310
Helix 88	AJ7	Z	361	364	Right-handed 310
Helix 89	AJ8	Z	368	371	Right-handed 310
Helix 90	AJ9	Z	375	377	Right-handed 310
Helix 91	AK1	Z	442	451	Right-handed alpha
Helix 92	AK2	Z	462	469	Right-handed alpha
Helix 93	AK3	Z	489	497	Right-handed alpha
Helix 94	AK4	Z	566	575	Right-handed alpha

There are 51 sheets in PDB entry 9CLN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	615	618	anti-parallel
Strand 3	J	99	108	anti-parallel
Strand 4	J	555	562	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	615	618	anti-parallel
Strand 3	J	99	108	anti-parallel
Strand 4	J	607	608	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	75	first strand
Strand 2	J	79	88	anti-parallel
Strand 3	J	577	586	anti-parallel
Strand 4	J	347	350	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	573	574	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	136	first strand
Strand 2	J	166	168	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	174	175	first strand
Strand 2	J	219	224	anti-parallel
Strand 3	J	284	289	parallel
Strand 4	J	263	268	anti-parallel
Strand 5	K	424	431	anti-parallel
Strand 6	K	439	440	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	174	175	first strand
Strand 2	J	219	224	anti-parallel
Strand 3	J	284	289	parallel
Strand 4	J	263	268	anti-parallel
Strand 5	K	424	431	anti-parallel
Strand 6	K	450	452	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	180	first strand
Strand 2	J	183	189	anti-parallel
Strand 3	J	192	195	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	250	251	first strand
Strand 2	J	259	260	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	298	302	first strand
Strand 2	J	318	321	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	327	329	first strand
Strand 2	J	593	595	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	439	440	first strand
Strand 2	J	424	431	anti-parallel
Strand 3	J	450	454	anti-parallel
Strand 4	L	165	172	parallel
Strand 5	L	133	137	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	439	440	first strand
Strand 2	J	424	431	anti-parallel
Strand 3	L	263	268	anti-parallel
Strand 4	L	284	289	anti-parallel
Strand 5	L	219	224	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	460	461	first strand
Strand 2	L	415	416	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	641	644	first strand
Strand 2	J	923	929	anti-parallel
Strand 3	J	937	943	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	649	656	first strand
Strand 2	J	914	921	anti-parallel
Strand 3	J	677	684	anti-parallel
Strand 4	J	871	874	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	662	670	first strand
Strand 2	J	899	907	anti-parallel
Strand 3	J	718	725	anti-parallel
Strand 4	J	729	730	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	662	670	first strand
Strand 2	J	899	907	anti-parallel
Strand 3	J	718	725	anti-parallel
Strand 4	J	743	744	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	799	806	first strand
Strand 2	J	858	865	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	607	618	anti-parallel
Strand 3	K	100	108	anti-parallel
Strand 4	K	555	562	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	79	88	anti-parallel
Strand 3	K	577	586	anti-parallel
Strand 4	K	347	350	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	95	first strand
Strand 2	K	573	574	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	L	450	454	parallel
Strand 4	L	424	430	anti-parallel
Strand 5	K	263	268	anti-parallel
Strand 6	K	284	289	anti-parallel
Strand 7	K	219	224	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	L	450	454	parallel
Strand 4	L	424	430	anti-parallel
Strand 5	L	440	441	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	180	first strand
Strand 2	K	183	189	anti-parallel
Strand 3	K	192	195	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	298	300	first strand
Strand 2	K	319	321	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	327	329	first strand
Strand 2	K	593	595	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	412	414	first strand
Strand 2	K	460	462	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	641	644	first strand
Strand 2	K	923	929	anti-parallel
Strand 3	K	937	943	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	649	656	first strand
Strand 2	K	914	921	anti-parallel
Strand 3	K	677	684	anti-parallel
Strand 4	K	871	874	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	662	670	first strand
Strand 2	K	899	907	anti-parallel
Strand 3	K	718	725	anti-parallel
Strand 4	K	743	744	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	755	756	first strand
Strand 2	K	761	762	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	798	806	first strand
Strand 2	K	858	866	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	607	618	anti-parallel
Strand 3	L	99	108	anti-parallel
Strand 4	L	555	563	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	79	88	anti-parallel
Strand 3	L	577	586	anti-parallel
Strand 4	L	347	350	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	179	180	first strand
Strand 2	L	183	189	anti-parallel
Strand 3	L	192	195	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	253	first strand
Strand 2	L	257	259	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	298	302	first strand
Strand 2	L	318	321	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	328	329	first strand
Strand 2	L	593	594	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	401	402	first strand
Strand 2	L	523	524	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	641	644	first strand
Strand 2	L	923	929	anti-parallel
Strand 3	L	937	943	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	649	656	first strand
Strand 2	L	914	921	anti-parallel
Strand 3	L	677	684	anti-parallel
Strand 4	L	871	874	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	662	670	first strand
Strand 2	L	899	907	anti-parallel
Strand 3	L	718	725	anti-parallel
Strand 4	L	729	730	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	662	670	first strand
Strand 2	L	899	907	anti-parallel
Strand 3	L	718	725	anti-parallel
Strand 4	L	743	744	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	755	756	first strand
Strand 2	L	761	762	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	799	806	first strand
Strand 2	L	858	865	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	230	232	first strand
Strand 2	Z	240	242	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	346	351	first strand
Strand 2	Z	335	340	anti-parallel
Strand 3	Z	379	383	anti-parallel
Strand 4	Z	397	399	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	357	360	first strand
Strand 2	Z	421	425	anti-parallel
Strand 3	Z	401	406	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	366	367	first strand
Strand 2	Z	372	373	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	481	485	first strand
Strand 2	Z	456	460	anti-parallel
Strand 3	Z	528	533	anti-parallel
Strand 4	Z	538	545	anti-parallel
Strand 5	Z	558	562	anti-parallel
Strand 6	Z	505	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CLN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLN