Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CLO entry

There are 2 chains in PDB entry 9CLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 20	LYS 806
B	GLY 20	LYS 806

There are 58 helices in PDB entry 9CLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	28	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	70	74	Right-handed 310
Helix 6	AA6	A	77	86	Right-handed alpha
Helix 7	AA7	A	133	153	Right-handed alpha
Helix 8	AA8	A	170	178	Right-handed alpha
Helix 9	AA9	A	201	210	Right-handed alpha
Helix 10	AB1	A	256	274	Right-handed alpha
Helix 11	AB2	A	278	294	Right-handed alpha
Helix 12	AB3	A	352	382	Right-handed alpha
Helix 13	AB4	A	394	408	Right-handed alpha
Helix 14	AB5	A	422	429	Right-handed alpha
Helix 15	AB6	A	430	448	Right-handed alpha
Helix 16	AB7	A	471	486	Right-handed alpha
Helix 17	AB8	A	512	530	Right-handed alpha
Helix 18	AB9	A	539	542	Right-handed 310
Helix 19	AC1	A	543	563	Right-handed alpha
Helix 20	AC2	A	598	610	Right-handed alpha
Helix 21	AC3	A	611	633	Right-handed alpha
Helix 22	AC4	A	645	651	Right-handed alpha
Helix 23	AC5	A	653	666	Right-handed alpha
Helix 24	AC6	A	677	683	Right-handed alpha
Helix 25	AC7	A	685	698	Right-handed alpha
Helix 26	AC8	A	710	720	Right-handed alpha
Helix 27	AC9	A	728	735	Right-handed alpha
Helix 28	AD1	A	738	740	Right-handed 310
Helix 29	AD2	A	741	756	Right-handed alpha
Helix 30	AD3	A	766	775	Right-handed alpha
Helix 31	AD4	A	794	802	Right-handed alpha
Helix 32	AD5	B	46	54	Right-handed alpha
Helix 33	AD6	B	77	88	Right-handed alpha
Helix 34	AD7	B	133	152	Right-handed alpha
Helix 35	AD8	B	170	178	Right-handed alpha
Helix 36	AD9	B	180	185	Right-handed alpha
Helix 37	AE1	B	202	208	Right-handed alpha
Helix 38	AE2	B	208	213	Right-handed alpha
Helix 39	AE3	B	256	274	Right-handed alpha
Helix 40	AE4	B	278	294	Right-handed alpha
Helix 41	AE5	B	352	384	Right-handed alpha
Helix 42	AE6	B	394	408	Right-handed alpha
Helix 43	AE7	B	422	430	Right-handed alpha
Helix 44	AE8	B	430	449	Right-handed alpha
Helix 45	AE9	B	471	485	Right-handed alpha
Helix 46	AF1	B	512	531	Right-handed alpha
Helix 47	AF2	B	541	563	Right-handed alpha
Helix 48	AF3	B	598	610	Right-handed alpha
Helix 49	AF4	B	611	633	Right-handed alpha
Helix 50	AF5	B	645	650	Right-handed alpha
Helix 51	AF6	B	653	664	Right-handed alpha
Helix 52	AF7	B	677	683	Right-handed alpha
Helix 53	AF8	B	685	698	Right-handed alpha
Helix 54	AF9	B	710	720	Right-handed alpha
Helix 55	AG1	B	728	738	Right-handed alpha
Helix 56	AG2	B	741	756	Right-handed alpha
Helix 57	AG3	B	766	775	Right-handed alpha
Helix 58	AG4	B	794	802	Right-handed alpha

There are 14 sheets in PDB entry 9CLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	123	130	anti-parallel
Strand 3	A	115	120	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	108	111	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	246	255	anti-parallel
Strand 4	A	229	240	anti-parallel
Strand 5	A	216	223	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	314	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	338	347	anti-parallel
Strand 4	A	324	332	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	459	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	500	506	anti-parallel
Strand 5	A	534	537	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	492	first strand
Strand 2	A	495	497	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	791	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	780	783	anti-parallel
Strand 4	A	758	764	parallel
Strand 5	A	724	727	parallel
Strand 6	A	701	705	parallel
Strand 7	A	672	676	parallel
Strand 8	A	640	643	parallel
Strand 9	A	580	588	parallel
Strand 10	A	566	574	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	595	596	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	35	36	anti-parallel
Strand 3	B	123	131	anti-parallel
Strand 4	B	108	120	anti-parallel
Strand 5	B	99	102	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	246	255	anti-parallel
Strand 4	B	232	240	anti-parallel
Strand 5	B	219	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	314	first strand
Strand 2	B	297	305	anti-parallel
Strand 3	B	338	347	anti-parallel
Strand 4	B	324	332	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	459	first strand
Strand 2	B	462	467	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	500	506	anti-parallel
Strand 5	B	534	537	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	565	574	anti-parallel
Strand 4	B	790	791	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	640	643	parallel
Strand 4	B	672	676	parallel
Strand 5	B	701	705	parallel
Strand 6	B	724	727	parallel
Strand 7	B	758	764	parallel
Strand 8	B	780	783	parallel
Strand 9	B	565	574	anti-parallel
Strand 10	B	790	791	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLO