Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CLP entry

There are 4 chains in PDB entry 9CLP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 195THR 614
C
 UNK 1UNK 7
H
 GLN 1SER 113
L
 GLN 1VAL 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9CLP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
210 217Right-handed alpha
Helix 2
AA2
A
220 239Right-handed alpha
Helix 3
AA3
A
240 242Right-handed 310
Helix 4
AA4
A
265 285Right-handed alpha
Helix 5
AA5
A
298 302Right-handed 310
Helix 6
AA6
A
327 343Right-handed alpha
Helix 7
AA7
A
359 363Right-handed 310
Helix 8
AA8
A
374 389Right-handed alpha
Helix 9
AA9
A
390 394Right-handed 310
Helix 10
AB1
A
509 518Right-handed alpha
Helix 11
AB2
A
528 535Right-handed 310
Helix 12
AB3
A
559 563Right-handed 310
Helix 13
AB4
H
28 32Right-handed 310
Helix 14
AB5
H
83 87Right-handed 310
Helix 15
AB6
L
79 83Right-handed 310
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There are 11 sheets in PDB entry 9CLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 253first strand
Strand 2
A
201 209parallel
Strand 3
A
289 294parallel
Strand 4
A
319 322parallel
Strand 5
A
304 306anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
438 439anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
474 475anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
500 501anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
567 568anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 605first strand
Strand 2
A
608 611anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
107 110parallel
Strand 3
H
88 91anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
96 98anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 24first strand
Strand 2
L
70 76anti-parallel
Strand 3
L
62 67anti-parallel
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