Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CLR entry

There are 4 chains in PDB entry 9CLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 162
A
 GLY 164ALA 260
B
 ALA 2LEU 162
B
 GLY 164ASN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9CLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
58 67Right-handed alpha
Helix 6
AA6
A
81 93Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
126 131Right-handed 310
Helix 9
AA9
A
151 159Right-handed alpha
Helix 10
AB1
A
164 175Right-handed alpha
Helix 11
AB2
A
195 199Right-handed 310
Helix 12
AB3
A
213 224Right-handed alpha
Helix 13
AB4
A
238 243Right-handed alpha
Helix 14
AB5
A
243 258Right-handed alpha
Helix 15
AB6
B
15 20Right-handed 310
Helix 16
AB7
B
21 28Right-handed alpha
Helix 17
AB8
B
47 51Right-handed 310
Helix 18
AB9
B
53 58Right-handed alpha
Helix 19
AC1
B
58 67Right-handed alpha
Helix 20
AC2
B
81 94Right-handed alpha
Helix 21
AC3
B
115 124Right-handed alpha
Helix 22
AC4
B
126 131Right-handed 310
Helix 23
AC5
B
151 159Right-handed alpha
Helix 24
AC6
B
164 175Right-handed alpha
Helix 25
AC7
B
195 199Right-handed 310
Helix 26
AC8
B
213 224Right-handed alpha
Helix 27
AC9
B
238 243Right-handed alpha
Helix 28
AD1
B
243 258Right-handed alpha
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There are 4 sheets in PDB entry 9CLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 9parallel
Strand 3
A
74 79parallel
Strand 4
A
97 103parallel
Strand 5
A
201 206parallel
Strand 6
A
228 232parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
145 149anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
5 9parallel
Strand 3
B
74 79parallel
Strand 4
B
97 103parallel
Strand 5
B
201 206parallel
Strand 6
B
228 232parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
146 149anti-parallel
Strand 3
B
178 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il