Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CLV entry

There are 4 chains in PDB entry 9CLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 103GLU 490
B
 GLY 103GLU 490
C
 GLY 103GLU 490
D
 GLY 103GLU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 9CLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 124Right-handed alpha
Helix 2
AA2
A
152 166Right-handed alpha
Helix 3
AA3
A
176 187Right-handed alpha
Helix 4
AA4
A
190 202Right-handed alpha
Helix 5
AA5
A
214 225Right-handed alpha
Helix 6
AA6
A
230 254Right-handed alpha
Helix 7
AA7
A
293 316Right-handed alpha
Helix 8
AA8
A
319 324Right-handed alpha
Helix 9
AA9
A
327 335Right-handed alpha
Helix 10
AB1
A
336 349Right-handed alpha
Helix 11
AB2
A
363 371Right-handed alpha
Helix 12
AB3
A
372 379Right-handed 310
Helix 13
AB4
A
381 394Right-handed alpha
Helix 14
AB5
A
394 421Right-handed alpha
Helix 15
AB6
A
431 433Right-handed 310
Helix 16
AB7
A
434 443Right-handed alpha
Helix 17
AB8
A
454 474Right-handed alpha
Helix 18
AB9
A
475 488Right-handed alpha
Helix 19
AC1
B
119 124Right-handed alpha
Helix 20
AC2
B
152 166Right-handed alpha
Helix 21
AC3
B
176 187Right-handed alpha
Helix 22
AC4
B
190 202Right-handed alpha
Helix 23
AC5
B
214 225Right-handed alpha
Helix 24
AC6
B
230 254Right-handed alpha
Helix 25
AC7
B
293 316Right-handed alpha
Helix 26
AC8
B
319 324Right-handed alpha
Helix 27
AC9
B
327 335Right-handed alpha
Helix 28
AD1
B
336 349Right-handed alpha
Helix 29
AD2
B
363 371Right-handed alpha
Helix 30
AD3
B
372 379Right-handed 310
Helix 31
AD4
B
381 394Right-handed alpha
Helix 32
AD5
B
394 421Right-handed alpha
Helix 33
AD6
B
431 433Right-handed 310
Helix 34
AD7
B
434 443Right-handed alpha
Helix 35
AD8
B
454 474Right-handed alpha
Helix 36
AD9
B
475 488Right-handed alpha
Helix 37
AE1
C
119 124Right-handed alpha
Helix 38
AE2
C
152 166Right-handed alpha
Helix 39
AE3
C
176 187Right-handed alpha
Helix 40
AE4
C
190 202Right-handed alpha
Helix 41
AE5
C
214 225Right-handed alpha
Helix 42
AE6
C
230 254Right-handed alpha
Helix 43
AE7
C
293 316Right-handed alpha
Helix 44
AE8
C
319 324Right-handed alpha
Helix 45
AE9
C
327 335Right-handed alpha
Helix 46
AF1
C
336 349Right-handed alpha
Helix 47
AF2
C
363 371Right-handed alpha
Helix 48
AF3
C
372 379Right-handed 310
Helix 49
AF4
C
381 394Right-handed alpha
Helix 50
AF5
C
394 421Right-handed alpha
Helix 51
AF6
C
431 433Right-handed 310
Helix 52
AF7
C
434 443Right-handed alpha
Helix 53
AF8
C
454 474Right-handed alpha
Helix 54
AF9
C
475 488Right-handed alpha
Helix 55
AG1
D
119 124Right-handed alpha
Helix 56
AG2
D
152 166Right-handed alpha
Helix 57
AG3
D
176 187Right-handed alpha
Helix 58
AG4
D
190 202Right-handed alpha
Helix 59
AG5
D
214 225Right-handed alpha
Helix 60
AG6
D
230 254Right-handed alpha
Helix 61
AG7
D
293 316Right-handed alpha
Helix 62
AG8
D
319 324Right-handed alpha
Helix 63
AG9
D
327 335Right-handed alpha
Helix 64
AH1
D
336 349Right-handed alpha
Helix 65
AH2
D
363 371Right-handed alpha
Helix 66
AH3
D
372 379Right-handed 310
Helix 67
AH4
D
381 394Right-handed alpha
Helix 68
AH5
D
394 421Right-handed alpha
Helix 69
AH6
D
431 433Right-handed 310
Helix 70
AH7
D
434 443Right-handed alpha
Helix 71
AH8
D
454 474Right-handed alpha
Helix 72
AH9
D
475 488Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9CLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 106first strand
Strand 2
D
117 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il