Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CLX entry

There are 2 chains in PDB entry 9CLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	ALA 1202
B	ASP 2	ASN 1200

There are111 helices in PDB entry 9CLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	43	Right-handed alpha
Helix 2	AA2	A	50	77	Right-handed alpha
Helix 3	AA3	A	78	80	Right-handed 310
Helix 4	AA4	A	85	97	Right-handed alpha
Helix 5	AA5	A	98	102	Right-handed 310
Helix 6	AA6	A	104	125	Right-handed alpha
Helix 7	AA7	A	142	150	Right-handed alpha
Helix 8	AA8	A	152	169	Right-handed alpha
Helix 9	AA9	A	171	190	Right-handed alpha
Helix 10	AB1	A	193	200	Right-handed alpha
Helix 11	AB2	A	206	238	Right-handed alpha
Helix 12	AB3	A	261	267	Right-handed 310
Helix 13	AB4	A	279	286	Right-handed alpha
Helix 14	AB5	A	291	305	Right-handed alpha
Helix 15	AB6	A	310	315	Right-handed alpha
Helix 16	AB7	A	352	372	Right-handed alpha
Helix 17	AB8	A	386	400	Right-handed alpha
Helix 18	AB9	A	401	408	Right-handed alpha
Helix 19	AC1	A	417	433	Right-handed alpha
Helix 20	AC2	A	435	451	Right-handed alpha
Helix 21	AC3	A	458	470	Right-handed alpha
Helix 22	AC4	A	498	519	Right-handed alpha
Helix 23	AC5	A	533	547	Right-handed alpha
Helix 24	AC6	A	551	560	Right-handed alpha
Helix 25	AC7	A	567	574	Right-handed alpha
Helix 26	AC8	A	574	589	Right-handed alpha
Helix 27	AC9	A	616	648	Right-handed alpha
Helix 28	AD1	A	650	677	Right-handed alpha
Helix 29	AD2	A	686	697	Right-handed alpha
Helix 30	AD3	A	698	702	Right-handed 310
Helix 31	AD4	A	704	724	Right-handed alpha
Helix 32	AD5	A	740	747	Right-handed alpha
Helix 33	AD6	A	750	771	Right-handed alpha
Helix 34	AD7	A	772	788	Right-handed alpha
Helix 35	AD8	A	792	798	Right-handed alpha
Helix 36	AD9	A	799	801	Right-handed 310
Helix 37	AE1	A	804	836	Right-handed alpha
Helix 38	AE2	A	887	903	Right-handed alpha
Helix 39	AE3	A	909	915	Right-handed alpha
Helix 40	AE4	A	950	970	Right-handed alpha
Helix 41	AE5	A	974	978	Right-handed 310
Helix 42	AE6	A	982	998	Right-handed alpha
Helix 43	AE7	A	999	1005	Right-handed alpha
Helix 44	AE8	A	1015	1029	Right-handed alpha
Helix 45	AE9	A	1033	1049	Right-handed alpha
Helix 46	AF1	A	1053	1055	Right-handed 310
Helix 47	AF2	A	1056	1066	Right-handed alpha
Helix 48	AF3	A	1082	1086	Right-handed 310
Helix 49	AF4	A	1096	1117	Right-handed alpha
Helix 50	AF5	A	1122	1126	Right-handed 310
Helix 51	AF6	A	1131	1143	Right-handed alpha
Helix 52	AF7	A	1149	1158	Right-handed alpha
Helix 53	AF8	A	1165	1172	Right-handed alpha
Helix 54	AF9	A	1172	1187	Right-handed alpha
Helix 55	AG1	B	2	6	Right-handed 310
Helix 56	AG2	B	13	42	Right-handed alpha
Helix 57	AG3	B	48	76	Right-handed alpha
Helix 58	AG4	B	76	83	Right-handed alpha
Helix 59	AG5	B	85	97	Right-handed alpha
Helix 60	AG6	B	98	102	Right-handed 310
Helix 61	AG7	B	104	124	Right-handed alpha
Helix 62	AG8	B	142	150	Right-handed alpha
Helix 63	AG9	B	152	169	Right-handed alpha
Helix 64	AH1	B	171	190	Right-handed alpha
Helix 65	AH2	B	193	200	Right-handed alpha
Helix 66	AH3	B	206	218	Right-handed alpha
Helix 67	AH4	B	218	238	Right-handed alpha
Helix 68	AH5	B	261	267	Right-handed 310
Helix 69	AH6	B	280	286	Right-handed alpha
Helix 70	AH7	B	291	304	Right-handed alpha
Helix 71	AH8	B	312	317	Right-handed alpha
Helix 72	AH9	B	352	372	Right-handed alpha
Helix 73	AI1	B	386	400	Right-handed alpha
Helix 74	AI2	B	401	408	Right-handed alpha
Helix 75	AI3	B	417	430	Right-handed alpha
Helix 76	AI4	B	436	452	Right-handed alpha
Helix 77	AI5	B	458	470	Right-handed alpha
Helix 78	AI6	B	484	489	Right-handed 310
Helix 79	AI7	B	498	520	Right-handed alpha
Helix 80	AI8	B	533	546	Right-handed alpha
Helix 81	AI9	B	551	560	Right-handed alpha
Helix 82	AJ1	B	567	574	Right-handed alpha
Helix 83	AJ2	B	574	589	Right-handed alpha
Helix 84	AJ3	B	616	647	Right-handed alpha
Helix 85	AJ4	B	650	677	Right-handed alpha
Helix 86	AJ5	B	685	697	Right-handed alpha
Helix 87	AJ6	B	704	725	Right-handed alpha
Helix 88	AJ7	B	740	747	Right-handed alpha
Helix 89	AJ8	B	750	771	Right-handed alpha
Helix 90	AJ9	B	772	788	Right-handed alpha
Helix 91	AK1	B	791	798	Right-handed alpha
Helix 92	AK2	B	804	836	Right-handed alpha
Helix 93	AK3	B	860	865	Right-handed 310
Helix 94	AK4	B	876	882	Right-handed alpha
Helix 95	AK5	B	883	885	Right-handed 310
Helix 96	AK6	B	887	903	Right-handed alpha
Helix 97	AK7	B	909	914	Right-handed alpha
Helix 98	AK8	B	950	970	Right-handed alpha
Helix 99	AK9	B	975	979	Right-handed 310
Helix 100	AL1	B	985	998	Right-handed alpha
Helix 101	AL2	B	999	1005	Right-handed alpha
Helix 102	AL3	B	1015	1031	Right-handed alpha
Helix 103	AL4	B	1033	1049	Right-handed alpha
Helix 104	AL5	B	1057	1069	Right-handed alpha
Helix 105	AL6	B	1082	1087	Right-handed 310
Helix 106	AL7	B	1096	1118	Right-handed alpha
Helix 107	AL8	B	1131	1143	Right-handed alpha
Helix 108	AL9	B	1144	1148	Right-handed 310
Helix 109	AM1	B	1149	1158	Right-handed alpha
Helix 110	AM2	B	1165	1172	Right-handed alpha
Helix 111	AM3	B	1172	1187	Right-handed alpha

There are 7 sheets in PDB entry 9CLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	473	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	847	first strand
Strand 2	A	1071	1072	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	137	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	473	474	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	346	347	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	847	first strand
Strand 2	B	1071	1072	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	930	934	first strand
Strand 2	B	941	945	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLX