Analysis of interatomic Contacts of Structural Units in PDB entry:
9CLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CLY entry

There are 2 chains in PDB entry 9CLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 240
B
 ASN -1ASP 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9CLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
58 74Right-handed alpha
Helix 4
AA4
A
90 94Right-handed 310
Helix 5
AA5
A
95 107Right-handed alpha
Helix 6
AA6
A
107 124Right-handed alpha
Helix 7
AA7
A
135 141Right-handed alpha
Helix 8
AA8
A
145 167Right-handed alpha
Helix 9
AA9
A
168 170Right-handed 310
Helix 10
AB1
A
183 188Right-handed alpha
Helix 11
AB2
A
191 199Right-handed alpha
Helix 12
AB3
A
207 220Right-handed alpha
Helix 13
AB4
A
221 224Right-handed 310
Helix 14
AB5
B
11 24Right-handed alpha
Helix 15
AB6
B
35 46Right-handed alpha
Helix 16
AB7
B
58 74Right-handed alpha
Helix 17
AB8
B
90 94Right-handed 310
Helix 18
AB9
B
95 107Right-handed alpha
Helix 19
AC1
B
107 125Right-handed alpha
Helix 20
AC2
B
135 141Right-handed alpha
Helix 21
AC3
B
145 167Right-handed alpha
Helix 22
AC4
B
168 170Right-handed 310
Helix 23
AC5
B
191 199Right-handed alpha
Helix 24
AC6
B
207 220Right-handed alpha
Helix 25
AC7
B
221 224Right-handed 310
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There are 2 sheets in PDB entry 9CLY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
27 32parallel
Strand 3
A
3 7parallel
Strand 4
A
78 81parallel
Strand 5
A
129 133parallel
Strand 6
A
172 178parallel
Strand 7
A
230 233parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
26 32parallel
Strand 3
B
2 7parallel
Strand 4
B
78 81parallel
Strand 5
B
129 133parallel
Strand 6
B
172 178parallel
Strand 7
B
230 233parallel
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