Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CM2 entry

There are 12 chains in PDB entry 9CM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	SER 5	ALA 961
K	ALA 2	THR 962
L	ALA 2	SER 957
Z	ALA 1	LEU 5
Z	MET 8	LEU 13
Z	ARG 15	ARG 15
Z	CYS 17	MET 18
Z	THR 21	TYR 24
Z	ALA 27	ARG 28
Z	VAL 30	PHE 31
Z	ASP 33	ASN 38
Z	PHE 40	GLY 430

There are 78 helices in PDB entry 9CM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	7	13	Right-handed alpha
Helix 2	AA2	J	19	24	Right-handed alpha
Helix 3	AA3	J	25	35	Right-handed alpha
Helix 4	AA4	J	278	284	Right-handed alpha
Helix 5	AA5	J	320	325	Right-handed 310
Helix 6	AA6	J	373	386	Right-handed alpha
Helix 7	AA7	J	403	408	Right-handed alpha
Helix 8	AA8	J	475	490	Right-handed alpha
Helix 9	AA9	J	491	492	Right-handed 310
Helix 10	AB1	J	493	497	Right-handed 310
Helix 11	AB2	J	511	518	Right-handed alpha
Helix 12	AB3	J	537	542	Right-handed alpha
Helix 13	AB4	J	551	562	Right-handed alpha
Helix 14	AB5	J	634	647	Right-handed alpha
Helix 15	AB6	J	697	699	Right-handed 310
Helix 16	AB7	J	716	721	Right-handed alpha
Helix 17	AB8	J	725	727	Right-handed 310
Helix 18	AB9	J	773	786	Right-handed alpha
Helix 19	AC1	J	805	809	Right-handed 310
Helix 20	AC2	J	829	833	Right-handed 310
Helix 21	AC3	J	862	866	Right-handed 310
Helix 22	AC4	K	8	13	Right-handed alpha
Helix 23	AC5	K	19	24	Right-handed alpha
Helix 24	AC6	K	25	34	Right-handed alpha
Helix 25	AC7	K	278	283	Right-handed alpha
Helix 26	AC8	K	320	325	Right-handed 310
Helix 27	AC9	K	338	342	Right-handed 310
Helix 28	AD1	K	373	385	Right-handed alpha
Helix 29	AD2	K	403	408	Right-handed alpha
Helix 30	AD3	K	454	456	Right-handed 310
Helix 31	AD4	K	475	490	Right-handed alpha
Helix 32	AD5	K	491	492	Right-handed 310
Helix 33	AD6	K	493	497	Right-handed 310
Helix 34	AD7	K	511	518	Right-handed alpha
Helix 35	AD8	K	521	526	Right-handed 310
Helix 36	AD9	K	538	543	Right-handed 310
Helix 37	AE1	K	551	562	Right-handed alpha
Helix 38	AE2	K	599	604	Right-handed alpha
Helix 39	AE3	K	611	616	Right-handed alpha
Helix 40	AE4	K	634	647	Right-handed alpha
Helix 41	AE5	K	697	699	Right-handed 310
Helix 42	AE6	K	716	721	Right-handed alpha
Helix 43	AE7	K	724	727	Right-handed 310
Helix 44	AE8	K	773	786	Right-handed alpha
Helix 45	AE9	K	805	809	Right-handed 310
Helix 46	AF1	K	898	902	Right-handed 310
Helix 47	AF2	K	903	907	Right-handed 310
Helix 48	AF3	L	6	13	Right-handed alpha
Helix 49	AF4	L	19	23	Right-handed 310
Helix 50	AF5	L	25	36	Right-handed alpha
Helix 51	AF6	L	40	44	Right-handed 310
Helix 52	AF7	L	277	283	Right-handed alpha
Helix 53	AF8	L	320	325	Right-handed 310
Helix 54	AF9	L	338	342	Right-handed 310
Helix 55	AG1	L	374	386	Right-handed alpha
Helix 56	AG2	L	403	408	Right-handed alpha
Helix 57	AG3	L	475	490	Right-handed alpha
Helix 58	AG4	L	491	492	Right-handed 310
Helix 59	AG5	L	493	497	Right-handed 310
Helix 60	AG6	L	511	518	Right-handed alpha
Helix 61	AG7	L	521	526	Right-handed 310
Helix 62	AG8	L	537	542	Right-handed alpha
Helix 63	AG9	L	551	560	Right-handed alpha
Helix 64	AH1	L	599	604	Right-handed alpha
Helix 65	AH2	L	611	616	Right-handed alpha
Helix 66	AH3	L	634	645	Right-handed alpha
Helix 67	AH4	L	695	699	Right-handed 310
Helix 68	AH5	L	716	721	Right-handed alpha
Helix 69	AH6	L	773	786	Right-handed alpha
Helix 70	AH7	L	805	809	Right-handed 310
Helix 71	AH8	L	897	905	Right-handed alpha
Helix 72	AH9	Z	40	44	Right-handed 310
Helix 73	AI1	Z	91	96	Right-handed 310
Helix 74	AI2	Z	235	240	Right-handed 310
Helix 75	AI3	Z	305	312	Right-handed alpha
Helix 76	AI4	Z	313	316	Right-handed 310
Helix 77	AI5	Z	346	353	Right-handed alpha
Helix 78	AI6	Z	418	429	Right-handed alpha

There are 43 sheets in PDB entry 9CM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	618	629	anti-parallel
Strand 3	J	100	108	anti-parallel
Strand 4	J	566	573	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	75	first strand
Strand 2	J	80	88	anti-parallel
Strand 3	J	588	596	anti-parallel
Strand 4	J	355	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	584	585	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	137	first strand
Strand 2	J	168	175	anti-parallel
Strand 3	K	462	465	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	177	178	first strand
Strand 2	J	228	232	anti-parallel
Strand 3	J	292	296	parallel
Strand 4	J	271	277	anti-parallel
Strand 5	K	434	439	anti-parallel
Strand 6	K	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	181	183	first strand
Strand 2	J	186	191	anti-parallel
Strand 3	J	202	204	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	306	310	first strand
Strand 2	J	326	329	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	420	424	first strand
Strand 2	J	471	473	anti-parallel
Strand 3	L	420	424	anti-parallel
Strand 4	L	471	473	anti-parallel
Strand 5	K	421	424	anti-parallel
Strand 6	K	471	472	anti-parallel
Strand 7	J	420	424	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	450	452	first strand
Strand 2	J	435	439	anti-parallel
Strand 3	L	271	276	anti-parallel
Strand 4	L	292	297	anti-parallel
Strand 5	L	232	233	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	464	465	first strand
Strand 2	L	174	175	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	652	654	first strand
Strand 2	J	936	940	anti-parallel
Strand 3	J	948	952	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	660	667	first strand
Strand 2	J	925	932	anti-parallel
Strand 3	J	688	695	anti-parallel
Strand 4	J	882	885	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	674	681	first strand
Strand 2	J	910	918	anti-parallel
Strand 3	J	729	736	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	810	817	first strand
Strand 2	J	869	876	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	618	629	anti-parallel
Strand 3	K	100	108	anti-parallel
Strand 4	K	567	574	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	79	88	anti-parallel
Strand 3	K	588	597	anti-parallel
Strand 4	K	355	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	95	first strand
Strand 2	K	584	585	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	168	175	anti-parallel
Strand 3	L	461	465	parallel
Strand 4	L	432	439	anti-parallel
Strand 5	K	271	277	anti-parallel
Strand 6	K	292	296	anti-parallel
Strand 7	K	228	231	parallel
Strand 8	K	177	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	168	175	anti-parallel
Strand 3	L	461	465	parallel
Strand 4	L	432	439	anti-parallel
Strand 5	L	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	188	191	first strand
Strand 2	K	202	204	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	306	310	first strand
Strand 2	K	326	329	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	652	655	first strand
Strand 2	K	935	940	anti-parallel
Strand 3	K	948	953	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	660	667	first strand
Strand 2	K	925	932	anti-parallel
Strand 3	K	688	695	anti-parallel
Strand 4	K	882	885	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	673	682	first strand
Strand 2	K	909	918	anti-parallel
Strand 3	K	729	736	anti-parallel
Strand 4	K	740	741	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	673	682	first strand
Strand 2	K	909	918	anti-parallel
Strand 3	K	729	736	anti-parallel
Strand 4	K	754	755	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	810	814	first strand
Strand 2	K	872	876	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	618	629	anti-parallel
Strand 3	L	100	108	anti-parallel
Strand 4	L	566	574	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	80	88	anti-parallel
Strand 3	L	588	596	anti-parallel
Strand 4	L	355	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	95	first strand
Strand 2	L	584	585	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	137	first strand
Strand 2	L	168	172	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	181	183	first strand
Strand 2	L	186	190	anti-parallel
Strand 3	L	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	306	310	first strand
Strand 2	L	326	329	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	409	410	first strand
Strand 2	L	534	535	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	653	655	first strand
Strand 2	L	935	940	anti-parallel
Strand 3	L	948	953	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	660	667	first strand
Strand 2	L	925	932	anti-parallel
Strand 3	L	688	694	anti-parallel
Strand 4	L	882	885	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	673	681	first strand
Strand 2	L	910	918	anti-parallel
Strand 3	L	729	736	anti-parallel
Strand 4	L	740	741	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	673	681	first strand
Strand 2	L	910	918	anti-parallel
Strand 3	L	729	736	anti-parallel
Strand 4	L	754	755	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	810	817	first strand
Strand 2	L	869	876	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	60	63	first strand
Strand 2	Z	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	99	103	first strand
Strand 2	Z	106	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	115	117	first strand
Strand 2	Z	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	199	200	first strand
Strand 2	Z	338	343	anti-parallel
Strand 3	Z	318	323	anti-parallel
Strand 4	Z	382	387	anti-parallel
Strand 5	Z	390	399	anti-parallel
Strand 6	Z	410	414	anti-parallel
Strand 7	Z	362	365	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	209	213	first strand
Strand 2	Z	219	225	anti-parallel
Strand 3	Z	230	233	anti-parallel
Strand 4	Z	284	288	anti-parallel
Strand 5	Z	261	270	anti-parallel
Strand 6	Z	245	248	anti-parallel
Strand 7	Z	209	213	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM2