Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CM5 entry

There are 2 chains in PDB entry 9CM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 1ASN 57
A
 MET 1GLU 2024
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 9CM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 17Right-handed alpha
Helix 2
AA2
B
22 38Right-handed alpha
Helix 3
AA3
B
39 57Right-handed alpha
Helix 4
AA4
A
4 11Right-handed 310
Helix 5
AA5
A
21 25Right-handed 310
Helix 6
AA6
A
26 37Right-handed alpha
Helix 7
AA7
A
46 49Right-handed 310
Helix 8
AA8
A
50 55Right-handed alpha
Helix 9
AA9
A
57 62Right-handed 310
Helix 10
AB1
A
66 86Right-handed alpha
Helix 11
AB2
A
137 147Right-handed alpha
Helix 12
AB3
A
147 152Right-handed alpha
Helix 13
AB4
A
153 158Right-handed alpha
Helix 14
AB5
A
159 161Right-handed 310
Helix 15
AB6
A
175 177Right-handed 310
Helix 16
AB7
A
178 187Right-handed alpha
Helix 17
AB8
A
188 189Right-handed 310
Helix 18
AB9
A
190 191Right-handed 310
Helix 19
AC1
A
192 197Right-handed alpha
Helix 20
AC2
A
201 215Right-handed alpha
Helix 21
AC3
A
218 234Right-handed alpha
Helix 22
AC4
A
249 257Right-handed alpha
Helix 23
AC5
A
257 262Right-handed alpha
Helix 24
AC6
A
266 275Right-handed alpha
Helix 25
AC7
A
276 280Right-handed 310
Helix 26
AC8
A
308 313Right-handed alpha
Helix 27
AC9
A
314 319Right-handed alpha
Helix 28
AD1
A
332 336Right-handed 310
Helix 29
AD2
A
395 400Right-handed alpha
Helix 30
AD3
A
403 420Right-handed alpha
Helix 31
AD4
A
423 438Right-handed alpha
Helix 32
AD5
A
448 453Right-handed 310
Helix 33
AD6
A
463 468Right-handed alpha
Helix 34
AD7
A
470 477Right-handed alpha
Helix 35
AD8
A
478 480Right-handed 310
Helix 36
AD9
A
496 502Right-handed 310
Helix 37
AE1
A
504 506Right-handed 310
Helix 38
AE2
A
515 519Right-handed 310
Helix 39
AE3
A
523 525Right-handed 310
Helix 40
AE4
A
526 532Right-handed alpha
Helix 41
AE5
A
533 539Right-handed alpha
Helix 42
AE6
A
560 564Right-handed 310
Helix 43
AE7
A
590 600Right-handed alpha
Helix 44
AE8
A
668 673Right-handed alpha
Helix 45
AE9
A
674 680Right-handed 310
Helix 46
AF1
A
681 685Right-handed 310
Helix 47
AF2
A
714 721Right-handed 310
Helix 48
AF3
A
722 727Right-handed alpha
Helix 49
AF4
A
728 734Right-handed 310
Helix 50
AF5
A
764 772Right-handed alpha
Helix 51
AF6
A
793 802Right-handed alpha
Helix 52
AF7
A
803 809Right-handed alpha
Helix 53
AF8
A
814 835Right-handed alpha
Helix 54
AF9
A
836 838Right-handed 310
Helix 55
AG1
A
858 862Right-handed 310
Helix 56
AG2
A
863 869Right-handed alpha
Helix 57
AG3
A
921 926Right-handed alpha
Helix 58
AG4
A
927 931Right-handed 310
Helix 59
AG5
A
957 963Right-handed alpha
Helix 60
AG6
A
963 970Right-handed alpha
Helix 61
AG7
A
972 976Right-handed 310
Helix 62
AG8
A
984 992Right-handed 310
Helix 63
AG9
A
997 1001Right-handed 310
Helix 64
AH1
A
1006 1010Right-handed 310
Helix 65
AH2
A
1011 1016Right-handed alpha
Helix 66
AH3
A
1074 1079Right-handed alpha
Helix 67
AH4
A
1128 1133Right-handed alpha
Helix 68
AH5
A
1138 1142Right-handed 310
Helix 69
AH6
A
1199 1206Right-handed alpha
Helix 70
AH7
A
1373 1377Right-handed 310
Helix 71
AH8
A
1383 1387Right-handed 310
Helix 72
AH9
A
1566 1570Right-handed 310
Helix 73
AI1
A
1579 1584Right-handed alpha
Helix 74
AI2
A
1736 1740Right-handed 310
Helix 75
AI3
A
1775 1779Right-handed 310
Helix 76
AI4
A
1867 1871Right-handed 310
Helix 77
AI5
A
1944 1948Right-handed 310
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There are 17 sheets in PDB entry 9CM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
283 285parallel
Strand 3
A
381 387anti-parallel
Strand 4
A
375 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
508 509anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 646first strand
Strand 2
A
690 691parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
666 667anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 737first strand
Strand 2
A
778 781anti-parallel
Strand 3
A
786 788anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 891first strand
Strand 2
A
910 911parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1152 1156first strand
Strand 2
A
1161 1164anti-parallel
Strand 3
A
1209 1210anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1322 1323first strand
Strand 2
A
1345 1348parallel
Strand 3
A
1405 1406parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1482 1484first strand
Strand 2
A
1497 1498anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1717 1718first strand
Strand 2
A
1765 1766parallel
Strand 3
A
1748 1751anti-parallel
Strand 4
A
1742 1745anti-parallel
Strand 5
A
1801 1802parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1732 1733first strand
Strand 2
A
1783 1784parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1814 1815first strand
Strand 2
A
1824 1825anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1844 1846first strand
Strand 2
A
1851 1853anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1877 1881first strand
Strand 2
A
1884 1888anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1927 1931first strand
Strand 2
A
1934 1939anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2008 2012first strand
Strand 2
A
2015 2019anti-parallel
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