Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CM8 entry

There are 2 chains in PDB entry 9CM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 379
B
 SER 2HIS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 9CM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
71 90Right-handed alpha
Helix 4
AA4
A
100 112Right-handed alpha
Helix 5
AA5
A
134 146Right-handed alpha
Helix 6
AA6
A
153 163Right-handed alpha
Helix 7
AA7
A
166 168Right-handed 310
Helix 8
AA8
A
175 179Right-handed 310
Helix 9
AA9
A
180 185Right-handed alpha
Helix 10
AB1
A
191 198Right-handed alpha
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
214 231Right-handed alpha
Helix 13
AB4
A
243 255Right-handed alpha
Helix 14
AB5
A
267 275Right-handed alpha
Helix 15
AB6
A
285 292Right-handed alpha
Helix 16
AB7
A
293 296Right-handed 310
Helix 17
AB8
A
309 314Right-handed alpha
Helix 18
AB9
A
323 337Right-handed alpha
Helix 19
AC1
A
337 347Right-handed alpha
Helix 20
AC2
A
355 368Right-handed alpha
Helix 21
AC3
B
12 27Right-handed alpha
Helix 22
AC4
B
49 54Right-handed alpha
Helix 23
AC5
B
70 90Right-handed alpha
Helix 24
AC6
B
100 113Right-handed alpha
Helix 25
AC7
B
134 146Right-handed alpha
Helix 26
AC8
B
153 163Right-handed alpha
Helix 27
AC9
B
166 168Right-handed 310
Helix 28
AD1
B
175 179Right-handed 310
Helix 29
AD2
B
180 185Right-handed alpha
Helix 30
AD3
B
191 197Right-handed alpha
Helix 31
AD4
B
209 213Right-handed 310
Helix 32
AD5
B
214 231Right-handed alpha
Helix 33
AD6
B
243 255Right-handed alpha
Helix 34
AD7
B
267 275Right-handed alpha
Helix 35
AD8
B
285 292Right-handed alpha
Helix 36
AD9
B
293 296Right-handed 310
Helix 37
AE1
B
309 314Right-handed alpha
Helix 38
AE2
B
323 337Right-handed alpha
Helix 39
AE3
B
339 347Right-handed alpha
Helix 40
AE4
B
355 368Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9CM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
33 39parallel
Strand 3
A
4 10parallel
Strand 4
A
93 97parallel
Strand 5
A
116 120parallel
Strand 6
A
148 151parallel
Strand 7
A
170 172parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
234 239parallel
Strand 3
A
201 206parallel
Strand 4
A
278 283parallel
Strand 5
A
299 301parallel
Strand 6
A
317 319parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
33 39parallel
Strand 3
B
4 10parallel
Strand 4
B
93 97parallel
Strand 5
B
116 120parallel
Strand 6
B
148 151parallel
Strand 7
B
170 172parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
234 239parallel
Strand 3
B
201 205parallel
Strand 4
B
278 283parallel
Strand 5
B
299 301parallel
Strand 6
B
317 319parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il