Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CM9 entry

There are 12 chains in PDB entry 9CM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	MET 6	ALA 957
K	PRO 4	ALA 954
L	THR 3	ALA 954
Z	ALA 1	LEU 5
Z	MET 8	LEU 13
Z	ARG 15	ARG 15
Z	CYS 17	MET 18
Z	THR 21	TYR 24
Z	ALA 27	ARG 28
Z	VAL 30	PHE 31
Z	ASP 33	ASN 38
Z	PHE 40	GLY 430

There are 78 helices in PDB entry 9CM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	6	13	Right-handed alpha
Helix 2	AA2	J	19	24	Right-handed alpha
Helix 3	AA3	J	25	35	Right-handed alpha
Helix 4	AA4	J	97	99	Right-handed 310
Helix 5	AA5	J	282	286	Right-handed 310
Helix 6	AA6	J	318	323	Right-handed 310
Helix 7	AA7	J	337	340	Right-handed 310
Helix 8	AA8	J	347	351	Right-handed 310
Helix 9	AA9	J	372	384	Right-handed alpha
Helix 10	AB1	J	401	406	Right-handed alpha
Helix 11	AB2	J	471	484	Right-handed alpha
Helix 12	AB3	J	485	488	Right-handed 310
Helix 13	AB4	J	489	493	Right-handed 310
Helix 14	AB5	J	507	514	Right-handed alpha
Helix 15	AB6	J	517	521	Right-handed 310
Helix 16	AB7	J	533	537	Right-handed 310
Helix 17	AB8	J	547	558	Right-handed alpha
Helix 18	AB9	J	595	599	Right-handed alpha
Helix 19	AC1	J	607	612	Right-handed alpha
Helix 20	AC2	J	630	641	Right-handed alpha
Helix 21	AC3	J	712	717	Right-handed alpha
Helix 22	AC4	J	720	723	Right-handed 310
Helix 23	AC5	J	755	759	Right-handed 310
Helix 24	AC6	J	769	782	Right-handed alpha
Helix 25	AC7	J	894	902	Right-handed 310
Helix 26	AC8	K	8	13	Right-handed alpha
Helix 27	AC9	K	25	35	Right-handed alpha
Helix 28	AD1	K	41	45	Right-handed 310
Helix 29	AD2	K	95	97	Right-handed 310
Helix 30	AD3	K	276	280	Right-handed 310
Helix 31	AD4	K	318	323	Right-handed 310
Helix 32	AD5	K	337	340	Right-handed 310
Helix 33	AD6	K	358	360	Right-handed 310
Helix 34	AD7	K	371	383	Right-handed alpha
Helix 35	AD8	K	401	406	Right-handed alpha
Helix 36	AD9	K	470	485	Right-handed alpha
Helix 37	AE1	K	486	488	Right-handed 310
Helix 38	AE2	K	489	493	Right-handed 310
Helix 39	AE3	K	507	514	Right-handed alpha
Helix 40	AE4	K	533	537	Right-handed 310
Helix 41	AE5	K	547	558	Right-handed alpha
Helix 42	AE6	K	573	578	Right-handed alpha
Helix 43	AE7	K	630	642	Right-handed alpha
Helix 44	AE8	K	643	647	Right-handed 310
Helix 45	AE9	K	693	695	Right-handed 310
Helix 46	AF1	K	720	723	Right-handed 310
Helix 47	AF2	K	769	782	Right-handed alpha
Helix 48	AF3	K	801	805	Right-handed 310
Helix 49	AF4	K	893	897	Right-handed 310
Helix 50	AF5	K	898	902	Right-handed 310
Helix 51	AF6	L	6	13	Right-handed alpha
Helix 52	AF7	L	19	24	Right-handed alpha
Helix 53	AF8	L	25	35	Right-handed alpha
Helix 54	AF9	L	276	281	Right-handed alpha
Helix 55	AG1	L	317	323	Right-handed 310
Helix 56	AG2	L	337	340	Right-handed 310
Helix 57	AG3	L	371	384	Right-handed alpha
Helix 58	AG4	L	401	406	Right-handed alpha
Helix 59	AG5	L	470	485	Right-handed alpha
Helix 60	AG6	L	489	493	Right-handed 310
Helix 61	AG7	L	507	514	Right-handed alpha
Helix 62	AG8	L	533	538	Right-handed alpha
Helix 63	AG9	L	548	558	Right-handed alpha
Helix 64	AH1	L	595	599	Right-handed alpha
Helix 65	AH2	L	630	641	Right-handed alpha
Helix 66	AH3	L	693	695	Right-handed 310
Helix 67	AH4	L	712	717	Right-handed alpha
Helix 68	AH5	L	721	723	Right-handed 310
Helix 69	AH6	L	755	760	Right-handed 310
Helix 70	AH7	L	770	782	Right-handed alpha
Helix 71	AH8	L	893	898	Right-handed alpha
Helix 72	AH9	Z	4	9	Right-handed 310
Helix 73	AI1	Z	24	28	Right-handed 310
Helix 74	AI2	Z	36	42	Right-handed alpha
Helix 75	AI3	Z	91	96	Right-handed 310
Helix 76	AI4	Z	235	241	Right-handed 310
Helix 77	AI5	Z	307	312	Right-handed alpha
Helix 78	AI6	Z	415	425	Right-handed alpha

There are 52 sheets in PDB entry 9CM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	613	625	anti-parallel
Strand 3	J	101	109	anti-parallel
Strand 4	J	562	569	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	76	first strand
Strand 2	J	79	88	anti-parallel
Strand 3	J	584	591	anti-parallel
Strand 4	J	353	356	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	580	581	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	138	first strand
Strand 2	J	166	174	anti-parallel
Strand 3	K	458	461	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	177	first strand
Strand 2	J	226	231	anti-parallel
Strand 3	J	290	295	parallel
Strand 4	J	269	274	anti-parallel
Strand 5	K	433	434	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	180	181	first strand
Strand 2	J	186	189	anti-parallel
Strand 3	J	201	202	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	257	260	first strand
Strand 2	J	263	266	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	335	first strand
Strand 2	J	600	602	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	418	420	first strand
Strand 2	J	467	469	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	435	438	first strand
Strand 2	J	446	449	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	648	650	first strand
Strand 2	J	930	936	anti-parallel
Strand 3	J	944	950	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	656	663	first strand
Strand 2	J	921	928	anti-parallel
Strand 3	J	684	691	anti-parallel
Strand 4	J	878	881	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	669	677	first strand
Strand 2	J	906	914	anti-parallel
Strand 3	J	725	732	anti-parallel
Strand 4	J	736	737	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	669	677	first strand
Strand 2	J	906	914	anti-parallel
Strand 3	J	725	732	anti-parallel
Strand 4	J	750	751	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	806	813	first strand
Strand 2	J	865	872	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	614	625	anti-parallel
Strand 3	K	99	108	anti-parallel
Strand 4	K	562	569	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	79	88	anti-parallel
Strand 3	K	584	593	anti-parallel
Strand 4	K	353	356	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	167	174	anti-parallel
Strand 3	L	457	461	parallel
Strand 4	L	430	434	anti-parallel
Strand 5	K	273	274	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	177	first strand
Strand 2	K	226	230	anti-parallel
Strand 3	K	291	294	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	180	182	first strand
Strand 2	K	185	194	anti-parallel
Strand 3	K	197	202	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	258	260	first strand
Strand 2	K	263	265	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	308	first strand
Strand 2	K	324	327	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	334	335	first strand
Strand 2	K	600	601	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	407	408	first strand
Strand 2	K	530	531	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	421	422	first strand
Strand 2	L	467	469	anti-parallel
Strand 3	L	418	420	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	648	651	first strand
Strand 2	K	931	936	anti-parallel
Strand 3	K	944	949	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	659	663	first strand
Strand 2	K	921	928	anti-parallel
Strand 3	K	684	691	anti-parallel
Strand 4	K	878	881	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	670	677	first strand
Strand 2	K	906	914	anti-parallel
Strand 3	K	725	732	anti-parallel
Strand 4	K	736	737	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	670	677	first strand
Strand 2	K	906	914	anti-parallel
Strand 3	K	725	732	anti-parallel
Strand 4	K	750	751	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	806	813	first strand
Strand 2	K	865	872	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	614	625	anti-parallel
Strand 3	L	99	108	anti-parallel
Strand 4	L	562	569	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	79	88	anti-parallel
Strand 3	L	584	593	anti-parallel
Strand 4	L	353	356	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	95	first strand
Strand 2	L	580	581	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	137	first strand
Strand 2	L	167	171	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	176	177	first strand
Strand 2	L	226	231	anti-parallel
Strand 3	L	290	295	parallel
Strand 4	L	269	273	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	180	182	first strand
Strand 2	L	185	187	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	189	190	first strand
Strand 2	L	200	201	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	263	265	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	304	308	first strand
Strand 2	L	324	327	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	333	335	first strand
Strand 2	L	600	602	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	407	408	first strand
Strand 2	L	530	531	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	648	651	first strand
Strand 2	L	930	936	anti-parallel
Strand 3	L	944	950	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	656	663	first strand
Strand 2	L	921	928	anti-parallel
Strand 3	L	684	691	anti-parallel
Strand 4	L	878	881	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	669	677	first strand
Strand 2	L	906	914	anti-parallel
Strand 3	L	725	732	anti-parallel
Strand 4	L	750	751	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	762	763	first strand
Strand 2	L	768	769	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	806	813	first strand
Strand 2	L	865	872	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	60	62	first strand
Strand 2	Z	69	71	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	76	77	first strand
Strand 2	Z	83	84	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	115	117	first strand
Strand 2	Z	124	126	anti-parallel

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There are 7 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	199	200	first strand
Strand 2	Z	338	343	anti-parallel
Strand 3	Z	318	323	anti-parallel
Strand 4	Z	383	386	anti-parallel
Strand 5	Z	391	397	anti-parallel
Strand 6	Z	410	414	anti-parallel
Strand 7	Z	362	365	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	219	224	first strand
Strand 2	Z	209	213	anti-parallel
Strand 3	Z	245	248	anti-parallel
Strand 4	Z	261	263	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	230	233	first strand
Strand 2	Z	284	288	anti-parallel
Strand 3	Z	265	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CM9