Analysis of interatomic Contacts of Structural Units in PDB entry:
9CME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CME entry

There is 1 chain in PDB entry 9CME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLY 681
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9CME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
49 63Right-handed alpha
Helix 5
AA5
A
74 92Right-handed alpha
Helix 6
AA6
A
95 100Right-handed alpha
Helix 7
AA7
A
100 105Right-handed alpha
Helix 8
AA8
A
107 112Right-handed alpha
Helix 9
AA9
A
117 121Right-handed 310
Helix 10
AB1
A
124 139Right-handed alpha
Helix 11
AB2
A
144 151Right-handed alpha
Helix 12
AB3
A
151 160Right-handed alpha
Helix 13
AB4
A
169 194Right-handed alpha
Helix 14
AB5
A
206 218Right-handed alpha
Helix 15
AB6
A
226 241Right-handed alpha
Helix 16
AB7
A
249 260Right-handed alpha
Helix 17
AB8
A
265 279Right-handed alpha
Helix 18
AB9
A
290 303Right-handed alpha
Helix 19
AC1
A
323 346Right-handed alpha
Helix 20
AC2
A
355 359Right-handed 310
Helix 21
AC3
A
367 372Right-handed alpha
Helix 22
AC4
A
373 378Right-handed alpha
Helix 23
AC5
A
408 426Right-handed alpha
Helix 24
AC6
A
434 441Right-handed 310
Helix 25
AC7
A
442 454Right-handed alpha
Helix 26
AC8
A
465 471Right-handed alpha
Helix 27
AC9
A
482 488Right-handed alpha
Helix 28
AD1
A
496 511Right-handed alpha
Helix 29
AD2
A
512 525Right-handed alpha
Helix 30
AD3
A
527 540Right-handed alpha
Helix 31
AD4
A
541 558Right-handed alpha
Helix 32
AD5
A
559 562Right-handed 310
Helix 33
AD6
A
579 592Right-handed alpha
Helix 34
AD7
A
623 642Right-handed alpha
Helix 35
AD8
A
646 650Right-handed 310
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There are 2 sheets in PDB entry 9CME. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 309first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
360 365parallel
Strand 4
A
394 398parallel
Strand 5
A
387 389anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 602first strand
Strand 2
A
607 619anti-parallel
Strand 3
A
666 677anti-parallel
Strand 4
A
652 661anti-parallel
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