Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CMF entry

There are 2 chains in PDB entry 9CMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 20	ILE 807
B	GLY 20	ILE 807

There are 61 helices in PDB entry 9CMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	29	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	64	69	Right-handed alpha
Helix 5	AA5	A	75	88	Right-handed alpha
Helix 6	AA6	A	133	151	Right-handed alpha
Helix 7	AA7	A	170	178	Right-handed alpha
Helix 8	AA8	A	180	185	Right-handed alpha
Helix 9	AA9	A	188	193	Right-handed alpha
Helix 10	AB1	A	201	212	Right-handed alpha
Helix 11	AB2	A	256	275	Right-handed alpha
Helix 12	AB3	A	278	294	Right-handed alpha
Helix 13	AB4	A	352	382	Right-handed alpha
Helix 14	AB5	A	394	408	Right-handed alpha
Helix 15	AB6	A	421	429	Right-handed alpha
Helix 16	AB7	A	430	449	Right-handed alpha
Helix 17	AB8	A	471	486	Right-handed alpha
Helix 18	AB9	A	512	531	Right-handed alpha
Helix 19	AC1	A	539	563	Right-handed alpha
Helix 20	AC2	A	598	610	Right-handed alpha
Helix 21	AC3	A	611	633	Right-handed alpha
Helix 22	AC4	A	645	650	Right-handed alpha
Helix 23	AC5	A	653	664	Right-handed alpha
Helix 24	AC6	A	677	683	Right-handed alpha
Helix 25	AC7	A	685	699	Right-handed alpha
Helix 26	AC8	A	710	720	Right-handed alpha
Helix 27	AC9	A	728	735	Right-handed alpha
Helix 28	AD1	A	741	755	Right-handed alpha
Helix 29	AD2	A	766	773	Right-handed alpha
Helix 30	AD3	A	794	802	Right-handed alpha
Helix 31	AD4	B	21	29	Right-handed alpha
Helix 32	AD5	B	46	54	Right-handed alpha
Helix 33	AD6	B	56	61	Right-handed alpha
Helix 34	AD7	B	64	68	Right-handed 310
Helix 35	AD8	B	76	87	Right-handed alpha
Helix 36	AD9	B	133	148	Right-handed alpha
Helix 37	AE1	B	170	178	Right-handed alpha
Helix 38	AE2	B	180	185	Right-handed alpha
Helix 39	AE3	B	188	193	Right-handed alpha
Helix 40	AE4	B	200	212	Right-handed alpha
Helix 41	AE5	B	256	275	Right-handed alpha
Helix 42	AE6	B	278	294	Right-handed alpha
Helix 43	AE7	B	352	384	Right-handed alpha
Helix 44	AE8	B	394	409	Right-handed alpha
Helix 45	AE9	B	422	429	Right-handed alpha
Helix 46	AF1	B	430	447	Right-handed alpha
Helix 47	AF2	B	471	485	Right-handed alpha
Helix 48	AF3	B	512	531	Right-handed alpha
Helix 49	AF4	B	539	562	Right-handed alpha
Helix 50	AF5	B	598	610	Right-handed alpha
Helix 51	AF6	B	611	633	Right-handed alpha
Helix 52	AF7	B	645	650	Right-handed alpha
Helix 53	AF8	B	653	666	Right-handed alpha
Helix 54	AF9	B	677	683	Right-handed alpha
Helix 55	AG1	B	685	698	Right-handed alpha
Helix 56	AG2	B	710	719	Right-handed alpha
Helix 57	AG3	B	728	734	Right-handed alpha
Helix 58	AG4	B	738	740	Right-handed 310
Helix 59	AG5	B	741	755	Right-handed alpha
Helix 60	AG6	B	766	773	Right-handed alpha
Helix 61	AG7	B	794	802	Right-handed alpha

There are 13 sheets in PDB entry 9CMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	125	132	anti-parallel
Strand 4	A	108	118	anti-parallel
Strand 5	A	97	102	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	246	255	anti-parallel
Strand 4	A	230	240	anti-parallel
Strand 5	A	216	222	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	315	first strand
Strand 2	A	297	305	anti-parallel
Strand 3	A	338	346	anti-parallel
Strand 4	A	325	332	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	459	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	500	506	anti-parallel
Strand 5	A	534	537	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	492	first strand
Strand 2	A	495	497	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	791	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	780	782	anti-parallel
Strand 4	A	758	762	parallel
Strand 5	A	724	727	parallel
Strand 6	A	701	704	parallel
Strand 7	A	672	676	parallel
Strand 8	A	640	643	parallel
Strand 9	A	580	588	parallel
Strand 10	A	566	574	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	595	596	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	123	130	anti-parallel
Strand 3	B	108	120	anti-parallel
Strand 4	B	96	102	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	246	255	anti-parallel
Strand 4	B	232	240	anti-parallel
Strand 5	B	216	220	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	314	first strand
Strand 2	B	297	305	anti-parallel
Strand 3	B	338	347	anti-parallel
Strand 4	B	324	332	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	459	first strand
Strand 2	B	462	467	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	500	506	anti-parallel
Strand 5	B	534	537	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	566	574	anti-parallel
Strand 4	B	790	791	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	640	643	parallel
Strand 4	B	672	676	parallel
Strand 5	B	701	705	parallel
Strand 6	B	724	727	parallel
Strand 7	B	758	762	parallel
Strand 8	B	780	782	parallel
Strand 9	B	566	574	anti-parallel
Strand 10	B	790	791	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMF