Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CMH entry

There are 2 chains in PDB entry 9CMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ASN 184
B
 SER 35GLY 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9CMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 27Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
77 104Right-handed alpha
Helix 4
AA4
A
110 149Right-handed alpha
Helix 5
AA5
A
161 184Right-handed alpha
Helix 6
AA6
B
92 104Right-handed alpha
Helix 7
AA7
B
170 174Right-handed 310
Helix 8
AA8
B
210 218Right-handed alpha
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There are 8 sheets in PDB entry 9CMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
53 54anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
127 144anti-parallel
Strand 3
B
40 46anti-parallel
Strand 4
B
194 195anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
153 168anti-parallel
Strand 3
B
127 144anti-parallel
Strand 4
B
40 46anti-parallel
Strand 5
B
198 199anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
185 186anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
118 122anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
238 242parallel
Strand 3
B
297 302anti-parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
270 275anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
313 315anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 254first strand
Strand 2
B
286 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il