Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CMI entry

There are 5 chains in PDB entry 9CMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ASN 184
B
 SER 35VAL 322
H
 GLU 27LYS 254
K
 LEU 4VAL 119
L
 ASP 26GLU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9CMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
74 101Right-handed alpha
Helix 3
AA3
A
112 149Right-handed alpha
Helix 4
AA4
A
161 183Right-handed alpha
Helix 5
AA5
B
53 55Right-handed 310
Helix 6
AA6
B
92 105Right-handed alpha
Helix 7
AA7
B
170 174Right-handed 310
Helix 8
AA8
B
210 218Right-handed alpha
Helix 9
AA9
H
130 137Right-handed alpha
Helix 10
AB1
H
242 244Right-handed 310
Helix 11
AB2
K
87 91Right-handed 310
Helix 12
AB3
L
146 153Right-handed alpha
Helix 13
AB4
L
208 213Right-handed alpha
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There are 21 sheets in PDB entry 9CMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
31 35anti-parallel
Strand 5
A
159 160anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
148 155anti-parallel
Strand 3
B
139 145anti-parallel
Strand 4
B
40 45anti-parallel
Strand 5
B
195 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
185 186anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
158 167anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
117 121anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
111 114anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
238 244parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
259 264anti-parallel
Strand 5
B
273 277anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
249 254anti-parallel
Strand 4
B
286 291anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 33first strand
Strand 2
H
43 51anti-parallel
Strand 3
H
104 110anti-parallel
Strand 4
H
94 99anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
84 86first strand
Strand 2
H
71 77anti-parallel
Strand 3
H
60 65anti-parallel
Strand 4
H
118 126anti-parallel
Strand 5
H
140 142anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
84 86first strand
Strand 2
H
71 77anti-parallel
Strand 3
H
60 65anti-parallel
Strand 4
H
118 126anti-parallel
Strand 5
H
147 149anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
175 182anti-parallel
Strand 3
H
216 225anti-parallel
Strand 4
H
209 210anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
190 194first strand
Strand 2
H
234 240anti-parallel
Strand 3
H
245 251anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
5 7first strand
Strand 2
K
17 23anti-parallel
Strand 3
K
78 84anti-parallel
Strand 4
K
68 73anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 11first strand
Strand 2
K
115 118parallel
Strand 3
K
92 99anti-parallel
Strand 4
K
33 39anti-parallel
Strand 5
K
46 51anti-parallel
Strand 6
K
58 60anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 11first strand
Strand 2
K
115 118parallel
Strand 3
K
92 99anti-parallel
Strand 4
K
108 111anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
44 50anti-parallel
Strand 3
L
95 100anti-parallel
Strand 4
L
87 91anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 37first strand
Strand 2
L
127 130parallel
Strand 3
L
110 116anti-parallel
Strand 4
L
58 63anti-parallel
Strand 5
L
70 73anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 37first strand
Strand 2
L
127 130parallel
Strand 3
L
110 116anti-parallel
Strand 4
L
121 123anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
139 143first strand
Strand 2
L
154 164anti-parallel
Strand 3
L
198 207anti-parallel
Strand 4
L
184 188anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 175first strand
Strand 2
L
216 223anti-parallel
Strand 3
L
230 235anti-parallel
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