Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CMO entry

There are 11 chains in PDB entry 9CMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	MET 6	ALA 957
K	PRO 4	ALA 954
L	THR 3	ALA 954
Z	ALA 1	LEU 5
Z	VAL 8	LEU 13
Z	ARG 15	ARG 15
Z	CYS 17	VAL 18
Z	THR 21	TYR 24
Z	ALA 27	PHE 28
Z	ALA 30	LEU 31
Z	SER 33	GLU 579

There are 94 helices in PDB entry 9CMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	6	13	Right-handed alpha
Helix 2	AA2	J	25	35	Right-handed alpha
Helix 3	AA3	J	95	98	Right-handed 310
Helix 4	AA4	J	317	323	Right-handed 310
Helix 5	AA5	J	337	340	Right-handed 310
Helix 6	AA6	J	347	351	Right-handed 310
Helix 7	AA7	J	371	384	Right-handed alpha
Helix 8	AA8	J	401	406	Right-handed alpha
Helix 9	AA9	J	471	484	Right-handed alpha
Helix 10	AB1	J	485	488	Right-handed 310
Helix 11	AB2	J	489	493	Right-handed 310
Helix 12	AB3	J	507	513	Right-handed alpha
Helix 13	AB4	J	517	521	Right-handed 310
Helix 14	AB5	J	548	558	Right-handed alpha
Helix 15	AB6	J	573	577	Right-handed 310
Helix 16	AB7	J	595	599	Right-handed alpha
Helix 17	AB8	J	630	641	Right-handed alpha
Helix 18	AB9	J	642	647	Right-handed 310
Helix 19	AC1	J	712	717	Right-handed alpha
Helix 20	AC2	J	721	723	Right-handed 310
Helix 21	AC3	J	769	782	Right-handed alpha
Helix 22	AC4	J	801	805	Right-handed 310
Helix 23	AC5	J	825	829	Right-handed 310
Helix 24	AC6	J	858	862	Right-handed 310
Helix 25	AC7	J	893	898	Right-handed alpha
Helix 26	AC8	K	8	13	Right-handed alpha
Helix 27	AC9	K	19	23	Right-handed 310
Helix 28	AD1	K	25	35	Right-handed alpha
Helix 29	AD2	K	275	279	Right-handed 310
Helix 30	AD3	K	318	323	Right-handed 310
Helix 31	AD4	K	337	340	Right-handed 310
Helix 32	AD5	K	347	351	Right-handed 310
Helix 33	AD6	K	372	384	Right-handed alpha
Helix 34	AD7	K	401	406	Right-handed alpha
Helix 35	AD8	K	471	484	Right-handed alpha
Helix 36	AD9	K	489	493	Right-handed 310
Helix 37	AE1	K	507	513	Right-handed alpha
Helix 38	AE2	K	517	521	Right-handed 310
Helix 39	AE3	K	533	538	Right-handed alpha
Helix 40	AE4	K	547	557	Right-handed alpha
Helix 41	AE5	K	573	578	Right-handed alpha
Helix 42	AE6	K	595	599	Right-handed alpha
Helix 43	AE7	K	630	643	Right-handed alpha
Helix 44	AE8	K	644	647	Right-handed 310
Helix 45	AE9	K	693	695	Right-handed 310
Helix 46	AF1	K	712	717	Right-handed alpha
Helix 47	AF2	K	721	723	Right-handed 310
Helix 48	AF3	K	769	782	Right-handed alpha
Helix 49	AF4	K	801	805	Right-handed 310
Helix 50	AF5	K	825	829	Right-handed 310
Helix 51	AF6	K	894	902	Right-handed 310
Helix 52	AF7	L	6	13	Right-handed alpha
Helix 53	AF8	L	25	35	Right-handed alpha
Helix 54	AF9	L	41	45	Right-handed 310
Helix 55	AG1	L	204	208	Right-handed 310
Helix 56	AG2	L	318	322	Right-handed 310
Helix 57	AG3	L	337	340	Right-handed 310
Helix 58	AG4	L	371	384	Right-handed alpha
Helix 59	AG5	L	401	406	Right-handed alpha
Helix 60	AG6	L	471	484	Right-handed alpha
Helix 61	AG7	L	485	488	Right-handed 310
Helix 62	AG8	L	489	493	Right-handed 310
Helix 63	AG9	L	507	513	Right-handed alpha
Helix 64	AH1	L	517	521	Right-handed 310
Helix 65	AH2	L	535	539	Right-handed 310
Helix 66	AH3	L	547	557	Right-handed alpha
Helix 67	AH4	L	595	599	Right-handed alpha
Helix 68	AH5	L	630	643	Right-handed alpha
Helix 69	AH6	L	644	647	Right-handed 310
Helix 70	AH7	L	712	717	Right-handed alpha
Helix 71	AH8	L	769	782	Right-handed alpha
Helix 72	AH9	L	801	805	Right-handed 310
Helix 73	AI1	L	825	829	Right-handed 310
Helix 74	AI2	L	893	899	Right-handed alpha
Helix 75	AI3	L	900	902	Right-handed 310
Helix 76	AI4	Z	3	7	Right-handed 310
Helix 77	AI5	Z	12	18	Right-handed alpha
Helix 78	AI6	Z	23	32	Right-handed alpha
Helix 79	AI7	Z	33	47	Right-handed alpha
Helix 80	AI8	Z	48	51	Right-handed 310
Helix 81	AI9	Z	53	63	Right-handed alpha
Helix 82	AJ1	Z	104	108	Right-handed 310
Helix 83	AJ2	Z	172	176	Right-handed 310
Helix 84	AJ3	Z	196	204	Right-handed alpha
Helix 85	AJ4	Z	251	255	Right-handed 310
Helix 86	AJ5	Z	282	287	Right-handed alpha
Helix 87	AJ6	Z	361	366	Right-handed alpha
Helix 88	AJ7	Z	367	371	Right-handed 310
Helix 89	AJ8	Z	375	379	Right-handed 310
Helix 90	AJ9	Z	442	452	Right-handed alpha
Helix 91	AK1	Z	462	469	Right-handed alpha
Helix 92	AK2	Z	489	496	Right-handed alpha
Helix 93	AK3	Z	548	553	Right-handed alpha
Helix 94	AK4	Z	566	578	Right-handed alpha

There are 48 sheets in PDB entry 9CMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	614	625	anti-parallel
Strand 3	J	100	108	anti-parallel
Strand 4	J	562	570	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	75	first strand
Strand 2	J	79	86	anti-parallel
Strand 3	J	586	593	anti-parallel
Strand 4	J	353	356	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	137	first strand
Strand 2	J	167	174	anti-parallel
Strand 3	K	459	461	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	177	first strand
Strand 2	J	226	231	anti-parallel
Strand 3	J	290	295	parallel
Strand 4	J	269	274	anti-parallel
Strand 5	K	433	436	anti-parallel
Strand 6	K	448	449	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	180	181	first strand
Strand 2	J	186	190	anti-parallel
Strand 3	J	200	202	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	258	260	first strand
Strand 2	J	263	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	304	308	first strand
Strand 2	J	324	327	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	335	first strand
Strand 2	J	600	602	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	418	419	first strand
Strand 2	J	468	469	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	421	422	first strand
Strand 2	K	467	468	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	446	449	first strand
Strand 2	J	432	438	anti-parallel
Strand 3	L	269	275	anti-parallel
Strand 4	L	290	295	anti-parallel
Strand 5	L	226	231	parallel
Strand 6	L	176	177	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	458	461	first strand
Strand 2	L	167	174	parallel
Strand 3	L	133	137	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	648	650	first strand
Strand 2	J	930	936	anti-parallel
Strand 3	J	944	950	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	659	663	first strand
Strand 2	J	921	928	anti-parallel
Strand 3	J	684	691	anti-parallel
Strand 4	J	878	881	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	670	678	first strand
Strand 2	J	905	914	anti-parallel
Strand 3	J	725	732	anti-parallel
Strand 4	J	750	751	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	806	813	first strand
Strand 2	J	865	872	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	614	625	anti-parallel
Strand 3	K	99	108	anti-parallel
Strand 4	K	562	569	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	79	88	anti-parallel
Strand 3	K	584	593	anti-parallel
Strand 4	K	353	356	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	95	first strand
Strand 2	K	580	581	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	167	171	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	177	first strand
Strand 2	K	226	231	anti-parallel
Strand 3	K	290	295	parallel
Strand 4	K	269	274	anti-parallel
Strand 5	L	430	438	anti-parallel
Strand 6	L	446	449	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	177	first strand
Strand 2	K	226	231	anti-parallel
Strand 3	K	290	295	parallel
Strand 4	K	269	274	anti-parallel
Strand 5	L	430	438	anti-parallel
Strand 6	L	457	459	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	180	182	first strand
Strand 2	K	185	190	anti-parallel
Strand 3	K	200	202	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	258	260	first strand
Strand 2	K	263	265	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	308	first strand
Strand 2	K	324	327	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	333	335	first strand
Strand 2	K	600	602	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	421	422	first strand
Strand 2	L	467	469	anti-parallel
Strand 3	L	418	420	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	648	650	first strand
Strand 2	K	931	936	anti-parallel
Strand 3	K	944	949	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	661	663	first strand
Strand 2	K	921	928	anti-parallel
Strand 3	K	684	691	anti-parallel
Strand 4	K	878	881	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	669	677	first strand
Strand 2	K	906	914	anti-parallel
Strand 3	K	725	732	anti-parallel
Strand 4	K	736	737	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	669	677	first strand
Strand 2	K	906	914	anti-parallel
Strand 3	K	725	732	anti-parallel
Strand 4	K	750	751	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	806	813	first strand
Strand 2	K	865	872	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	68	first strand
Strand 2	L	614	624	anti-parallel
Strand 3	L	99	108	anti-parallel
Strand 4	L	562	570	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	79	88	anti-parallel
Strand 3	L	584	593	anti-parallel
Strand 4	L	353	356	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	95	first strand
Strand 2	L	580	581	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	180	182	first strand
Strand 2	L	185	190	anti-parallel
Strand 3	L	200	202	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	263	265	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	304	308	first strand
Strand 2	L	324	327	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	333	335	first strand
Strand 2	L	600	602	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	407	408	first strand
Strand 2	L	530	531	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	648	651	first strand
Strand 2	L	930	936	anti-parallel
Strand 3	L	944	950	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	659	663	first strand
Strand 2	L	921	928	anti-parallel
Strand 3	L	684	691	anti-parallel
Strand 4	L	878	881	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	669	677	first strand
Strand 2	L	906	914	anti-parallel
Strand 3	L	725	732	anti-parallel
Strand 4	L	750	751	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	806	813	first strand
Strand 2	L	865	872	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	125	127	first strand
Strand 2	Z	135	137	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	230	232	first strand
Strand 2	Z	240	242	anti-parallel

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There are 7 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	325	326	first strand
Strand 2	Z	481	485	anti-parallel
Strand 3	Z	456	460	anti-parallel
Strand 4	Z	528	533	anti-parallel
Strand 5	Z	538	545	anti-parallel
Strand 6	Z	558	562	anti-parallel
Strand 7	Z	505	508	anti-parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	397	399	first strand
Strand 2	Z	380	383	anti-parallel
Strand 3	Z	335	339	anti-parallel
Strand 4	Z	346	352	anti-parallel
Strand 5	Z	357	360	anti-parallel
Strand 6	Z	421	425	anti-parallel
Strand 7	Z	401	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMO