Analysis of interatomic Contacts of Structural Units in PDB entry:
9CMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CMP entry

There are 3 chains in PDB entry 9CMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 U 1 U 21
T
 C 1 A 22
A
 PHE 23ALA 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 9CMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 82Right-handed alpha
Helix 2
AA2
A
140 148Right-handed alpha
Helix 3
AA3
A
158 167Right-handed alpha
Helix 4
AA4
A
167 172Right-handed alpha
Helix 5
AA5
A
229 237Right-handed alpha
Helix 6
AA6
A
251 259Right-handed alpha
Helix 7
AA7
A
364 369Right-handed alpha
Helix 8
AA8
A
372 387Right-handed alpha
Helix 9
AA9
A
388 391Right-handed 310
Helix 10
AB1
A
430 434Right-handed 310
Helix 11
AB2
A
463 481Right-handed alpha
Helix 12
AB3
A
497 499Right-handed 310
Helix 13
AB4
A
500 512Right-handed alpha
Helix 14
AB5
A
527 537Right-handed alpha
Helix 15
AB6
A
549 554Right-handed alpha
Helix 16
AB7
A
556 571Right-handed alpha
Helix 17
AB8
A
584 589Right-handed 310
Helix 18
AB9
A
641 658Right-handed alpha
Helix 19
AC1
A
672 674Right-handed 310
Helix 20
AC2
A
675 695Right-handed alpha
Helix 21
AC3
A
719 723Right-handed 310
Helix 22
AC4
A
775 786Right-handed alpha
Helix 23
AC5
A
787 789Right-handed 310
Helix 24
AC6
A
800 816Right-handed alpha
Helix 25
AC7
A
819 824Right-handed alpha
Helix 26
AC8
A
833 846Right-handed alpha
Helix 27
AC9
A
849 854Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9CMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
38 47anti-parallel
Strand 4
A
401 412anti-parallel
Strand 5
A
734 736anti-parallel
Strand 6
A
747 751anti-parallel
Strand 7
A
763 770anti-parallel
Strand 8
A
701 708anti-parallel
Strand 9
A
663 666parallel
Strand 10
A
591 599parallel
Strand 11
A
610 617anti-parallel
Strand 12
A
625 632anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
38 47anti-parallel
Strand 4
A
715 717anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
128 139anti-parallel
Strand 5
A
113 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 288first strand
Strand 2
A
326 329anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il