Analysis of interatomic Contacts of Structural Units in PDB entry:
9CNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CNT entry

There are 4 chains in PDB entry 9CNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLY 222
B
 PRO 1VAL 221
C
 PRO 1VAL 221
D
 PRO 1VAL 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9CNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
63 84Right-handed alpha
Helix 5
AA5
A
99 105Right-handed alpha
Helix 6
AA6
A
109 118Right-handed alpha
Helix 7
AA7
A
125 146Right-handed alpha
Helix 8
AA8
A
160 175Right-handed alpha
Helix 9
AA9
A
178 188Right-handed alpha
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
195 205Right-handed alpha
Helix 12
AB3
A
210 218Right-handed alpha
Helix 13
AB4
B
16 30Right-handed alpha
Helix 14
AB5
B
35 44Right-handed alpha
Helix 15
AB6
B
48 57Right-handed alpha
Helix 16
AB7
B
62 84Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
109 118Right-handed alpha
Helix 19
AC1
B
125 146Right-handed alpha
Helix 20
AC2
B
160 175Right-handed alpha
Helix 21
AC3
B
178 193Right-handed alpha
Helix 22
AC4
B
195 206Right-handed alpha
Helix 23
AC5
B
210 218Right-handed alpha
Helix 24
AC6
C
16 30Right-handed alpha
Helix 25
AC7
C
35 44Right-handed alpha
Helix 26
AC8
C
48 59Right-handed alpha
Helix 27
AC9
C
64 84Right-handed alpha
Helix 28
AD1
C
99 105Right-handed alpha
Helix 29
AD2
C
109 118Right-handed alpha
Helix 30
AD3
C
125 146Right-handed alpha
Helix 31
AD4
C
160 176Right-handed alpha
Helix 32
AD5
C
178 193Right-handed alpha
Helix 33
AD6
C
195 202Right-handed alpha
Helix 34
AD7
C
210 218Right-handed alpha
Helix 35
AD8
D
16 30Right-handed alpha
Helix 36
AD9
D
35 44Right-handed alpha
Helix 37
AE1
D
48 59Right-handed alpha
Helix 38
AE2
D
63 84Right-handed alpha
Helix 39
AE3
D
99 105Right-handed alpha
Helix 40
AE4
D
109 118Right-handed alpha
Helix 41
AE5
D
126 146Right-handed alpha
Helix 42
AE6
D
149 153Right-handed 310
Helix 43
AE7
D
160 175Right-handed alpha
Helix 44
AE8
D
178 188Right-handed alpha
Helix 45
AE9
D
188 193Right-handed alpha
Helix 46
AF1
D
195 206Right-handed alpha
Helix 47
AF2
D
210 218Right-handed alpha
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There are 3 sheets in PDB entry 9CNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
9 12anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
9 12anti-parallel
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