Analysis of interatomic Contacts of Structural Units in PDB entry:
9CO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CO6 entry

There are 6 chains in PDB entry 9CO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 22	GLU 1145
C	THR 22	GLU 1145
A	THR 22	GLU 1145
E	GLN 1	SER 129
F	GLN 1	SER 129
D	GLN 1	SER 129

There are 57 helices in PDB entry 9CO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	289	299	Right-handed alpha
Helix 2	AA2	B	333	338	Right-handed alpha
Helix 3	AA3	B	361	367	Right-handed alpha
Helix 4	AA4	B	398	405	Right-handed 310
Helix 5	AA5	B	411	417	Right-handed alpha
Helix 6	AA6	B	564	566	Right-handed 310
Helix 7	AA7	B	732	738	Right-handed alpha
Helix 8	AA8	B	742	750	Right-handed alpha
Helix 9	AA9	B	753	777	Right-handed alpha
Helix 10	AB1	B	811	821	Right-handed alpha
Helix 11	AB2	B	861	879	Right-handed alpha
Helix 12	AB3	B	881	885	Right-handed 310
Helix 13	AB4	B	892	903	Right-handed alpha
Helix 14	AB5	B	908	913	Right-handed alpha
Helix 15	AB6	B	914	936	Right-handed alpha
Helix 16	AB7	B	940	961	Right-handed alpha
Helix 17	AB8	B	971	979	Right-handed alpha
Helix 18	AB9	B	980	1028	Right-handed alpha
Helix 19	AC1	B	1136	1144	Right-handed alpha
Helix 20	AC2	C	289	299	Right-handed alpha
Helix 21	AC3	C	333	338	Right-handed alpha
Helix 22	AC4	C	361	366	Right-handed 310
Helix 23	AC5	C	378	382	Right-handed 310
Helix 24	AC6	C	400	402	Right-handed 310
Helix 25	AC7	C	411	416	Right-handed alpha
Helix 26	AC8	C	732	738	Right-handed alpha
Helix 27	AC9	C	741	752	Right-handed alpha
Helix 28	AD1	C	753	778	Right-handed alpha
Helix 29	AD2	C	811	821	Right-handed alpha
Helix 30	AD3	C	845	849	Right-handed alpha
Helix 31	AD4	C	861	879	Right-handed alpha
Helix 32	AD5	C	892	903	Right-handed alpha
Helix 33	AD6	C	908	913	Right-handed alpha
Helix 34	AD7	C	914	936	Right-handed alpha
Helix 35	AD8	C	940	961	Right-handed alpha
Helix 36	AD9	C	971	977	Right-handed alpha
Helix 37	AE1	C	980	1028	Right-handed alpha
Helix 38	AE2	C	1136	1144	Right-handed alpha
Helix 39	AE3	A	289	299	Right-handed alpha
Helix 40	AE4	A	333	338	Right-handed alpha
Helix 41	AE5	A	400	402	Right-handed 310
Helix 42	AE6	A	411	416	Right-handed alpha
Helix 43	AE7	A	732	738	Right-handed alpha
Helix 44	AE8	A	741	750	Right-handed alpha
Helix 45	AE9	A	753	778	Right-handed alpha
Helix 46	AF1	A	811	821	Right-handed alpha
Helix 47	AF2	A	861	879	Right-handed alpha
Helix 48	AF3	A	881	885	Right-handed 310
Helix 49	AF4	A	892	903	Right-handed alpha
Helix 50	AF5	A	908	913	Right-handed alpha
Helix 51	AF6	A	914	936	Right-handed alpha
Helix 52	AF7	A	940	961	Right-handed alpha
Helix 53	AF8	A	971	977	Right-handed alpha
Helix 54	AF9	A	980	1028	Right-handed alpha
Helix 55	AG1	A	1136	1143	Right-handed alpha
Helix 56	AG2	E	87	91	Right-handed 310
Helix 57	AG3	D	87	91	Right-handed 310

There are 53 sheets in PDB entry 9CO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	57	61	anti-parallel
Strand 3	B	261	264	anti-parallel
Strand 4	B	85	90	anti-parallel
Strand 5	B	184	192	anti-parallel
Strand 6	B	195	203	anti-parallel
Strand 7	B	217	225	anti-parallel
Strand 8	B	33	34	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	C	560	562	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	579	583	anti-parallel
Strand 5	C	541	549	anti-parallel
Strand 6	C	534	538	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	266	274	anti-parallel
Strand 3	B	280	285	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	112	116	anti-parallel
Strand 4	B	99	101	anti-parallel
Strand 5	B	234	235	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	314	first strand
Strand 2	B	587	594	anti-parallel
Strand 3	B	604	608	anti-parallel
Strand 4	B	643	646	anti-parallel
Strand 5	B	637	639	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	323	first strand
Strand 2	B	533	538	parallel
Strand 3	B	541	549	anti-parallel
Strand 4	B	579	583	anti-parallel
Strand 5	B	568	572	anti-parallel
Strand 6	B	560	562	anti-parallel
Strand 7	A	39	41	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	389	397	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	426	432	anti-parallel
Strand 5	B	373	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	519	520	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	449	first strand
Strand 2	B	487	489	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	483	484	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	655	first strand
Strand 2	B	686	692	parallel
Strand 3	B	665	670	anti-parallel
Strand 4	B	659	662	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	696	697	first strand
Strand 2	A	782	783	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	710	first strand
Strand 2	B	1067	1073	anti-parallel
Strand 3	B	1089	1092	anti-parallel
Strand 4	B	1097	1100	anti-parallel
Strand 5	B	1108	1109	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	723	first strand
Strand 2	B	1054	1064	anti-parallel
Strand 3	B	1042	1051	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	731	first strand
Strand 2	B	853	856	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	785	first strand
Strand 2	C	696	699	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1115	1120	first strand
Strand 2	B	1081	1085	anti-parallel
Strand 3	B	1076	1077	anti-parallel
Strand 4	B	1128	1129	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	28	first strand
Strand 2	C	57	61	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	52	first strand
Strand 2	C	266	274	anti-parallel
Strand 3	C	280	285	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	225	first strand
Strand 2	C	195	203	anti-parallel
Strand 3	C	184	192	anti-parallel
Strand 4	C	85	90	anti-parallel
Strand 5	C	260	264	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	121	124	anti-parallel
Strand 3	C	113	116	anti-parallel
Strand 4	C	96	102	anti-parallel
Strand 5	C	232	237	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	314	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	604	608	anti-parallel
Strand 4	C	643	646	anti-parallel
Strand 5	C	637	639	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	353	first strand
Strand 2	C	390	398	anti-parallel
Strand 3	C	502	509	anti-parallel
Strand 4	C	426	432	anti-parallel
Strand 5	C	373	374	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	449	first strand
Strand 2	C	487	489	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	469	first strand
Strand 2	C	483	484	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	650	first strand
Strand 2	C	686	691	parallel
Strand 3	C	665	670	anti-parallel
Strand 4	C	659	662	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	706	710	first strand
Strand 2	C	1067	1071	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	723	first strand
Strand 2	C	1054	1064	anti-parallel
Strand 3	C	1042	1051	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	728	731	first strand
Strand 2	C	853	856	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	782	785	first strand
Strand 2	A	696	699	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1115	1117	first strand
Strand 2	C	1082	1085	anti-parallel
Strand 3	C	1076	1077	anti-parallel
Strand 4	C	1128	1129	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1089	1092	first strand
Strand 2	C	1097	1100	anti-parallel
Strand 3	C	1108	1109	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	A	57	61	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	85	90	anti-parallel
Strand 5	A	184	192	anti-parallel
Strand 6	A	195	203	anti-parallel
Strand 7	A	217	224	anti-parallel
Strand 8	A	33	34	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	266	274	anti-parallel
Strand 3	A	280	285	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	234	235	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	121	126	anti-parallel
Strand 3	A	164	167	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	312	first strand
Strand 2	A	589	594	anti-parallel
Strand 3	A	604	608	anti-parallel
Strand 4	A	643	646	anti-parallel
Strand 5	A	637	639	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	533	538	parallel
Strand 3	A	541	548	anti-parallel
Strand 4	A	579	583	anti-parallel
Strand 5	A	568	572	anti-parallel
Strand 6	A	560	562	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	353	first strand
Strand 2	A	389	398	anti-parallel
Strand 3	A	502	511	anti-parallel
Strand 4	A	426	432	anti-parallel
Strand 5	A	373	374	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	487	489	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	483	484	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	655	first strand
Strand 2	A	686	692	parallel
Strand 3	A	665	670	anti-parallel
Strand 4	A	659	662	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	710	first strand
Strand 2	A	1067	1071	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	723	first strand
Strand 2	A	1054	1064	anti-parallel
Strand 3	A	1042	1051	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	731	first strand
Strand 2	A	853	854	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1115	1120	first strand
Strand 2	A	1081	1085	anti-parallel
Strand 3	A	1076	1077	anti-parallel
Strand 4	A	1128	1129	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1089	1092	first strand
Strand 2	A	1097	1100	anti-parallel
Strand 3	A	1108	1109	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	123	127	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	69	73	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	123	127	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	69	73	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	123	127	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CO6