Analysis of interatomic Contacts of Structural Units in PDB entry:
9CO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CO7 entry

There are 4 chains in PDB entry 9CO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 321LYS 524
E
 GLN 1SER 129
A
 ILE 321LYS 524
D
 GLN 1SER 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9CO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
332 338Right-handed alpha
Helix 2
AA2
B
344 348Right-handed 310
Helix 3
AA3
B
411 417Right-handed alpha
Helix 4
AA4
E
87 91Right-handed 310
Helix 5
AA5
A
333 338Right-handed alpha
Helix 6
AA6
A
344 348Right-handed 310
Helix 7
AA7
A
400 405Right-handed 310
Helix 8
AA8
A
412 417Right-handed alpha
Helix 9
AA9
A
497 500Right-handed 310
Helix 10
AB1
D
87 91Right-handed 310
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There are 11 sheets in PDB entry 9CO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
388 397anti-parallel
Strand 3
B
503 511anti-parallel
Strand 4
B
426 432anti-parallel
Strand 5
B
371 375anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 449first strand
Strand 2
B
487 489anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 469first strand
Strand 2
B
483 484anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
17 24anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
69 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
123 127parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
32 39anti-parallel
Strand 5
E
46 50anti-parallel
Strand 6
E
59 60anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
388 398anti-parallel
Strand 3
A
502 511anti-parallel
Strand 4
A
428 432anti-parallel
Strand 5
A
371 373anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
487 489anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
483 484anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
126 127parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 60first strand
Strand 2
D
46 50anti-parallel
Strand 3
D
32 39anti-parallel
Strand 4
D
93 100anti-parallel
Strand 5
D
123 124anti-parallel
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