Analysis of interatomic Contacts of Structural Units in PDB entry:
9COK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9COK entry

There are 7 chains in PDB entry 9COK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 535GLY 582
D
 ARG 532PRO 579
C
 ARG 532LYS 589
A
 ILE 7PRO 1446
E
 GLU 538ILE 578
F
 LEU 594SER 610
G
 ASP 636ASP 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9COK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
536 541Right-handed alpha
Helix 2
AA2
B
542 573Right-handed alpha
Helix 3
AA3
D
533 541Right-handed alpha
Helix 4
AA4
D
542 574Right-handed alpha
Helix 5
AA5
C
533 541Right-handed alpha
Helix 6
AA6
C
542 578Right-handed alpha
Helix 7
AA7
A
22 33Right-handed alpha
Helix 8
AA8
A
43 56Right-handed alpha
Helix 9
AA9
A
60 77Right-handed alpha
Helix 10
AB1
A
79 83Right-handed 310
Helix 11
AB2
A
87 96Right-handed alpha
Helix 12
AB3
A
104 120Right-handed alpha
Helix 13
AB4
A
121 137Right-handed alpha
Helix 14
AB5
A
140 156Right-handed alpha
Helix 15
AB6
A
156 163Right-handed alpha
Helix 16
AB7
A
166 189Right-handed alpha
Helix 17
AB8
A
190 194Right-handed 310
Helix 18
AB9
A
231 255Right-handed alpha
Helix 19
AC1
A
260 273Right-handed alpha
Helix 20
AC2
A
274 280Right-handed alpha
Helix 21
AC3
A
282 289Right-handed alpha
Helix 22
AC4
A
289 300Right-handed alpha
Helix 23
AC5
A
309 326Right-handed alpha
Helix 24
AC6
A
330 346Right-handed alpha
Helix 25
AC7
A
349 355Right-handed alpha
Helix 26
AC8
A
356 362Right-handed 310
Helix 27
AC9
A
369 382Right-handed alpha
Helix 28
AD1
A
389 406Right-handed alpha
Helix 29
AD2
A
425 434Right-handed alpha
Helix 30
AD3
A
439 445Right-handed alpha
Helix 31
AD4
A
447 451Right-handed 310
Helix 32
AD5
A
479 486Right-handed 310
Helix 33
AD6
A
488 492Right-handed 310
Helix 34
AD7
A
505 511Right-handed alpha
Helix 35
AD8
A
516 526Right-handed alpha
Helix 36
AD9
A
557 573Right-handed alpha
Helix 37
AE1
A
574 579Right-handed alpha
Helix 38
AE2
A
725 730Right-handed alpha
Helix 39
AE3
A
731 747Right-handed alpha
Helix 40
AE4
A
753 760Right-handed alpha
Helix 41
AE5
A
802 821Right-handed alpha
Helix 42
AE6
A
847 874Right-handed alpha
Helix 43
AE7
A
904 912Right-handed alpha
Helix 44
AE8
A
922 940Right-handed alpha
Helix 45
AE9
A
943 965Right-handed alpha
Helix 46
AF1
A
972 982Right-handed alpha
Helix 47
AF2
A
982 992Right-handed alpha
Helix 48
AF3
A
993 997Right-handed 310
Helix 49
AF4
A
1014 1029Right-handed alpha
Helix 50
AF5
A
1033 1042Right-handed alpha
Helix 51
AF6
A
1049 1056Right-handed alpha
Helix 52
AF7
A
1067 1083Right-handed alpha
Helix 53
AF8
A
1096 1110Right-handed alpha
Helix 54
AF9
A
1115 1126Right-handed alpha
Helix 55
AG1
A
1126 1138Right-handed alpha
Helix 56
AG2
A
1158 1178Right-handed alpha
Helix 57
AG3
A
1191 1209Right-handed alpha
Helix 58
AG4
A
1220 1224Right-handed alpha
Helix 59
AG5
A
1236 1241Right-handed alpha
Helix 60
AG6
A
1293 1309Right-handed alpha
Helix 61
AG7
A
1311 1323Right-handed alpha
Helix 62
AG8
A
1391 1407Right-handed alpha
Helix 63
AG9
E
538 541Right-handed 310
Helix 64
AH1
E
542 573Right-handed alpha
Helix 65
AH2
F
602 607Right-handed 310
Helix 66
AH3
G
657 672Right-handed alpha
Helix 67
AH4
G
674 686Right-handed alpha
Helix 68
AH5
G
690 704Right-handed alpha
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There are 7 sheets in PDB entry 9COK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
B
575 578anti-parallel
Strand 3
F
595 598parallel
Strand 4
E
575 576anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
224 230parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
199 202anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 555first strand
Strand 2
A
538 540anti-parallel
Strand 3
A
763 767parallel
Strand 4
A
790 792anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
835 840anti-parallel
Strand 3
A
715 720anti-parallel
Strand 4
A
883 885anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 891first strand
Strand 2
A
894 897anti-parallel
Strand 3
A
900 901anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1114first strand
Strand 2
A
1212 1213parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1230first strand
Strand 2
A
1418 1424anti-parallel
Strand 3
A
1246 1251anti-parallel
Strand 4
A
1371 1373anti-parallel
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