Analysis of interatomic Contacts of Structural Units in PDB entry:
9CP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CP0 entry

There are 4 chains in PDB entry 9CP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 425	ALA 654
C	PRO 425	ALA 654
D	PRO 425	ALA 654
A	PRO 425	ALA 654

There are 5 helices in PDB entry 9CP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	632	638	Right-handed alpha
Helix 2	AA2	C	632	638	Right-handed alpha
Helix 3	AA3	D	632	638	Right-handed alpha
Helix 4	AA4	A	487	491	Right-handed 310
Helix 5	AA5	A	632	638	Right-handed alpha

There are 20 sheets in PDB entry 9CP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	468	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	496	502	anti-parallel
Strand 4	B	505	520	anti-parallel
Strand 5	B	526	535	anti-parallel
Strand 6	B	594	602	anti-parallel
Strand 7	B	472	474	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	468	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	496	502	anti-parallel
Strand 4	B	505	520	anti-parallel
Strand 5	B	648	652	anti-parallel
Strand 6	B	426	429	anti-parallel
Strand 7	B	478	481	anti-parallel
Strand 8	B	484	485	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	552	561	anti-parallel
Strand 3	B	569	576	anti-parallel
Strand 4	B	628	629	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	543	first strand
Strand 2	B	585	589	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	610	first strand
Strand 2	B	613	617	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	468	first strand
Strand 2	C	453	458	anti-parallel
Strand 3	C	496	502	anti-parallel
Strand 4	C	505	520	anti-parallel
Strand 5	C	526	535	anti-parallel
Strand 6	C	594	602	anti-parallel
Strand 7	C	472	474	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	468	first strand
Strand 2	C	453	458	anti-parallel
Strand 3	C	496	502	anti-parallel
Strand 4	C	505	520	anti-parallel
Strand 5	C	648	652	anti-parallel
Strand 6	C	426	429	anti-parallel
Strand 7	C	478	481	anti-parallel
Strand 8	C	484	485	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	443	first strand
Strand 2	C	552	561	anti-parallel
Strand 3	C	569	576	anti-parallel
Strand 4	C	628	629	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	543	first strand
Strand 2	C	585	589	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	605	610	first strand
Strand 2	C	613	617	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	468	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	496	502	anti-parallel
Strand 4	D	505	520	anti-parallel
Strand 5	D	526	535	anti-parallel
Strand 6	D	594	602	anti-parallel
Strand 7	D	472	474	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	468	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	496	502	anti-parallel
Strand 4	D	505	520	anti-parallel
Strand 5	D	648	652	anti-parallel
Strand 6	D	426	429	anti-parallel
Strand 7	D	478	481	anti-parallel
Strand 8	D	484	485	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	443	first strand
Strand 2	D	552	561	anti-parallel
Strand 3	D	569	576	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	543	first strand
Strand 2	D	585	589	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	610	first strand
Strand 2	D	613	617	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	468	first strand
Strand 2	A	453	458	anti-parallel
Strand 3	A	496	502	anti-parallel
Strand 4	A	505	520	anti-parallel
Strand 5	A	526	535	anti-parallel
Strand 6	A	594	602	anti-parallel
Strand 7	A	472	474	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	468	first strand
Strand 2	A	453	458	anti-parallel
Strand 3	A	496	502	anti-parallel
Strand 4	A	505	520	anti-parallel
Strand 5	A	648	652	anti-parallel
Strand 6	A	426	429	anti-parallel
Strand 7	A	478	481	anti-parallel
Strand 8	A	484	486	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	552	561	anti-parallel
Strand 3	A	569	576	anti-parallel
Strand 4	A	628	629	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	543	first strand
Strand 2	A	585	589	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	610	first strand
Strand 2	A	613	617	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CP0