Analysis of interatomic Contacts of Structural Units in PDB entry:
9CP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CP5 entry

There are 3 chains in PDB entry 9CP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 57LEU 594
H
 GLU 1ARG 219
L
 GLU 1ASN 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9CP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 68Right-handed alpha
Helix 2
AA2
A
69 74Right-handed alpha
Helix 3
AA3
A
74 83Right-handed alpha
Helix 4
AA4
A
88 99Right-handed alpha
Helix 5
AA5
A
99 115Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
130 147Right-handed alpha
Helix 8
AA8
A
148 162Right-handed alpha
Helix 9
AA9
A
166 170Right-handed 310
Helix 10
AB1
A
201 211Right-handed alpha
Helix 11
AB2
A
225 245Right-handed alpha
Helix 12
AB3
A
259 275Right-handed alpha
Helix 13
AB4
A
277 287Right-handed alpha
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
A
315 324Right-handed alpha
Helix 16
AB7
A
329 363Right-handed alpha
Helix 17
AB8
A
366 370Right-handed 310
Helix 18
AB9
A
376 379Right-handed 310
Helix 19
AC1
A
380 386Right-handed alpha
Helix 20
AC2
A
391 426Right-handed alpha
Helix 21
AC3
A
426 431Right-handed alpha
Helix 22
AC4
A
435 452Right-handed alpha
Helix 23
AC5
A
453 455Right-handed 310
Helix 24
AC6
A
458 470Right-handed alpha
Helix 25
AC7
A
473 490Right-handed alpha
Helix 26
AC8
A
492 505Right-handed alpha
Helix 27
AC9
A
510 518Right-handed alpha
Helix 28
AD1
A
519 534Right-handed alpha
Helix 29
AD2
A
547 563Right-handed alpha
Helix 30
AD3
A
563 576Right-handed alpha
Helix 31
AD4
A
579 589Right-handed alpha
Helix 32
AD5
H
28 32Right-handed 310
Helix 33
AD6
L
80 84Right-handed 310
Helix 34
AD7
L
122 128Right-handed 310
Helix 35
AD8
L
184 189Right-handed alpha
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There are 9 sheets in PDB entry 9CP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
143 151anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
169 171anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
143 151anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
175 177anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
200 204anti-parallel
Strand 3
H
213 215anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
103 106parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
163 164anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 156first strand
Strand 2
L
147 151anti-parallel
Strand 3
L
192 197anti-parallel
Strand 4
L
206 211anti-parallel
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