Analysis of interatomic Contacts of Structural Units in PDB entry:
9CP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CP7 entry

There are 2 chains in PDB entry 9CP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 436
B
 ILE 2VAL 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9CP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 34Right-handed alpha
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
55 64Right-handed alpha
Helix 4
AA4
A
67 91Right-handed alpha
Helix 5
AA5
A
126 140Right-handed alpha
Helix 6
AA6
A
158 169Right-handed alpha
Helix 7
AA7
A
177 188Right-handed alpha
Helix 8
AA8
A
203 214Right-handed alpha
Helix 9
AA9
A
237 250Right-handed alpha
Helix 10
AB1
A
263 280Right-handed alpha
Helix 11
AB2
A
282 297Right-handed alpha
Helix 12
AB3
A
304 316Right-handed alpha
Helix 13
AB4
A
326 334Right-handed alpha
Helix 14
AB5
A
347 354Right-handed alpha
Helix 15
AB6
A
365 369Right-handed 310
Helix 16
AB7
A
374 377Right-handed 310
Helix 17
AB8
A
391 407Right-handed alpha
Helix 18
AB9
A
408 423Right-handed alpha
Helix 19
AC1
B
15 47Right-handed alpha
Helix 20
AC2
B
55 64Right-handed alpha
Helix 21
AC3
B
67 91Right-handed alpha
Helix 22
AC4
B
126 140Right-handed alpha
Helix 23
AC5
B
158 169Right-handed alpha
Helix 24
AC6
B
177 188Right-handed alpha
Helix 25
AC7
B
203 214Right-handed alpha
Helix 26
AC8
B
237 250Right-handed alpha
Helix 27
AC9
B
263 280Right-handed alpha
Helix 28
AD1
B
282 297Right-handed alpha
Helix 29
AD2
B
304 316Right-handed alpha
Helix 30
AD3
B
326 334Right-handed alpha
Helix 31
AD4
B
347 354Right-handed alpha
Helix 32
AD5
B
365 369Right-handed 310
Helix 33
AD6
B
374 377Right-handed 310
Helix 34
AD7
B
391 407Right-handed alpha
Helix 35
AD8
B
408 423Right-handed alpha
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There are 4 sheets in PDB entry 9CP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
257 261parallel
Strand 4
A
228 232parallel
Strand 5
A
319 323parallel
Strand 6
A
339 342parallel
Strand 7
B
379 387parallel
Strand 8
B
103 111anti-parallel
Strand 9
B
95 98anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
103 111anti-parallel
Strand 3
A
379 387anti-parallel
Strand 4
B
339 342parallel
Strand 5
B
319 323parallel
Strand 6
B
228 232parallel
Strand 7
B
257 261parallel
Strand 8
B
298 301parallel
Strand 9
B
3 6anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
144 149parallel
Strand 3
A
114 119parallel
Strand 4
A
197 199parallel
Strand 5
A
218 219parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
144 149parallel
Strand 3
B
114 119parallel
Strand 4
B
197 199parallel
Strand 5
B
218 219parallel
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