Analysis of interatomic Contacts of Structural Units in PDB entry:
9CQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CQJ entry

There are 4 chains in PDB entry 9CQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 36ARG 415
B
 GLY 34LYS 410
D
 SER 4HIS 99
E
 ASP 5HIS 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9CQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 61Right-handed alpha
Helix 2
AA2
A
70 84Right-handed alpha
Helix 3
AA3
A
87 97Right-handed alpha
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
118 120Right-handed 310
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
165 181Right-handed alpha
Helix 8
AA8
A
261 263Right-handed 310
Helix 9
AA9
A
278 284Right-handed alpha
Helix 10
AB1
A
286 296Right-handed alpha
Helix 11
AB2
A
317 323Right-handed alpha
Helix 12
AB3
A
326 331Right-handed alpha
Helix 13
AB4
A
337 342Right-handed alpha
Helix 14
AB5
A
367 377Right-handed 310
Helix 15
AB6
B
37 61Right-handed alpha
Helix 16
AB7
B
70 84Right-handed alpha
Helix 17
AB8
B
87 97Right-handed alpha
Helix 18
AB9
B
103 117Right-handed alpha
Helix 19
AC1
B
118 121Right-handed 310
Helix 20
AC2
B
143 155Right-handed alpha
Helix 21
AC3
B
165 181Right-handed alpha
Helix 22
AC4
B
261 263Right-handed 310
Helix 23
AC5
B
278 284Right-handed alpha
Helix 24
AC6
B
286 296Right-handed alpha
Helix 25
AC7
B
317 323Right-handed alpha
Helix 26
AC8
B
326 331Right-handed alpha
Helix 27
AC9
B
337 342Right-handed alpha
Helix 28
AD1
B
367 377Right-handed 310
Helix 29
AD2
D
78 82Right-handed 310
Helix 30
AD3
E
78 82Right-handed 310
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There are 8 sheets in PDB entry 9CQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
400 406anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
265 272anti-parallel
Strand 5
A
253 259anti-parallel
Strand 6
A
230 248anti-parallel
Strand 7
A
298 316anti-parallel
Strand 8
A
219 227first strand
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
128 137parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
348 359parallel
Strand 5
A
298 316anti-parallel
Strand 6
A
230 248anti-parallel
Strand 7
A
380 383first strand
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
400 406anti-parallel
Strand 3
B
388 394anti-parallel
Strand 4
B
265 272anti-parallel
Strand 5
B
253 259anti-parallel
Strand 6
B
231 248anti-parallel
Strand 7
B
298 316anti-parallel
Strand 8
B
219 225first strand
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 161first strand
Strand 2
B
128 137parallel
Strand 3
B
198 206anti-parallel
Strand 4
B
348 359parallel
Strand 5
B
298 316anti-parallel
Strand 6
B
231 248anti-parallel
Strand 7
B
380 383first strand
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 16first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
58 62anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 53first strand
Strand 2
D
33 40anti-parallel
Strand 3
D
69 77anti-parallel
Strand 4
D
89 95anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 16first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
58 62anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 53first strand
Strand 2
E
33 40anti-parallel
Strand 3
E
69 77anti-parallel
Strand 4
E
89 95anti-parallel
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